Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of drought-tolerance genes in the germination stage of soybean

ABSTRACT: An investigation into a sub set of soybean genetic variantion

INSTRUMENT(S): -

ORGANISM(S): Glycine Max

SUBMITTER: Center of crop germplasm resource, Institute of Crop Science, Chinese Academy of Agricultural Sciences

PROVIDER: PRJEB48592 | EVA | 2021-11-07

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	soydata.accessioned.vcf.gz	Vcf
	soydata.accessioned.vcf.gz.csi	Vcf
	soydata.accessioned.vcf.gz.tbi	Vcf
	soydata.vcf.gz	Vcf
	soydata.vcf.gz.csi	Vcf

Items per page:

1 - 5 of 6

Similar Datasets

Investigation of cattle genetic variants

Project description:An investigation into a sub set of cattle genetic variantion

| PRJEB75603 | ENA

Investigation of soybean genetic variants. isgv

Project description:An investigation into a sub set of soybean genetic variantion

2021-10-31 | PRJEB48438 | EVA

Identification of differentially expressed genes between developing seeds of different soybean cultivars

2015-04-29 | GSE21598 | GEO

Identification of genes differentially expressed between developing seeds of different soybean varieties

Project description:Soybean is a rich source of protein and oil and a primary feedstock for biodiesel production. Previous research on soybean indicated that protein, oil and yield are controlled quantitatively in soybean seeds. However, genetic mechanisms controlling seed composition and yield in soybean remain unknown. We used Affymetrix Soybean GeneChips® to identify genes that are differentially expressed between developing seeds of the Minsoy and Archer soybean varieties, which differ in seed weight, yield, protein content and oil content. Some of the differentially expressed genes identified in this study may play important roles in controlling these traits. The soybean plants of two soybean varieties Minsoy and Archer and two recombinant inbred lines from the cross that are similar in maturity but differ in yield were grown in St Paul, Minnesota during the summers of 2007 and 2008. In 2007, each line was planted as a single row. In 2008, a randomized complete block (RCB) design was used and each line had 3 replicates planted 1-2 weeks apart. Within each replicate, two rows per line were planted. Seeds were harvested at three developmental stages, namely, seed length = 2 mm, 3.5 mm, and 5-6 mm, which correspond approximately to soybean reproductive stages R4, R5 and early R6, respectively. In 2007 three independent samples were collected for each line and developmental stage. In 2008, two seed samples (one from each row) were collected for each line at each stage within each replicate. The pairs of seed samples were then pooled. Thus, three sets of independent tissue samples were collected for RNA extraction and hybridization on Affymetrix microarrys.

2015-04-29 | E-GEOD-21598 | biostudies-arrayexpress

Identification of heat stress-responsive genes in soybean

Project description:To characterize heat stress-responsive genes and to clarify the heat stress-responsive transcription pathways, transcriptome analysis of soybean was conducted using microarray. Soybean (Glycine max cv. Williams82) were grown in plastic pots filled with nutrient soil for 2 weeks with a 12 h light (28Â°C)/12 h dark (25Â°C) regimen (ca. 1500 Î¼mol photons mâ2 sâ1) and were treated for 30 min at 42Â°C.

2017-02-23 | E-MTAB-4504 | biostudies-arrayexpress

Peroxidase plays important roles in soybean tolerance to Al toxicity

Project description:Aluminum (Al) toxicity is an important restraint to soybean (Glycine max L. Merr.) production on acid soils. However, little is known about the genes underlying Al tolerance in soybean. We used microarrays to detail the global programme of gene expression under control and Al stress in two soybean at 6, 12, and 24 h.

2021-12-30 | GSE116796 | GEO

RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean

Project description:Oxidative stress caused by ground level ozone is a major contributor to yield loss in a number of important crop plants. Soybean (Glycine max) is especially ozone sensitive, and research into its response to oxidative stress is limited. To better understand the genetic response in soybean to oxidative stress, an RNA-seq analysis of two soybean cultivars was performed comparing an ozone intolerant cultivar and an ozone resistant cultivar after being exposed to ozone. A cursory analysis of the transcriptome data revealed differences between cultivars in the expression levels of genes previously implicated in oxidative stress responses, indicating unique cultivar-specific responses. An examination of the timing of gene responses over the course of ozone exposure showed expression of cuticle wax genes in the intolerant line over all sampled time points, whereas the tolerant line only expressed this pathway in the first time point. The ozone tolerant cultivar has a thicker leaf structure and we believe this lends a passive benefit to the plant which the intolerant cultivar is attempting to supplement via cuticle wax synthesis. These results suggest that differences in genetic responses work in concert with physiological differences to explain differences in ozone tolerance between soybean cultivars.

2016-01-21 | GSE59076 | GEO

Identification of soybean YAB1-like binding sites in soybean seeds during seed development

Project description:To dissect the gene regulatory networks operating during soybean seed development, we identified the binding sites genome-wide for transcription factor in soybean seeds during seed development using ChIP-seq

2019-08-02 | GSE135268 | GEO

Identification of Soybean WOX9-like binding sites in soybean seeds during seed development

2019-08-02 | GSE135267 | GEO

Identification of Soybean AGL62-like binding sites in soybean seeds during seed development

2019-08-02 | GSE135265 | GEO