Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Icelandic horse DNA sequence data

ABSTRACT: Two regions in the Icelandic horse genome, one in ECA4 and one in ECA9, were investigated with sequence data in relation to gaits. This investigation was a continuation of another paper published in December 2023; https://doi.org/10.1186/s12711-023-00863-6

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Equus Caballus

SUBMITTER: The Swedish University of Agricultural Sciences, Dept. of Animal Biosciences and The Agricultural University of Iceland, Fac. of Agricultural Sciences

PROVIDER: PRJEB82503 | EVA | 2024-11-16

REPOSITORIES: EVA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	Sample_WC-3612-723_bqsr1.QTL_ECA4_ECA9.accessioned.vcf.gz	Vcf
	Sample_WC-3612-723_bqsr1.QTL_ECA4_ECA9.accessioned.vcf.gz.csi	Vcf
	Sample_WC-3612-723_bqsr1.QTL_ECA4_ECA9.vcf.csi	Other
	Sample_WC-3612-723_bqsr1.QTL_ECA4_ECA9.vcf.gz	Vcf
	Sample_WC-3612-755_bqsr1.QTL_ECA4_ECA9.accessioned.vcf.gz	Vcf

Items per page:

1 - 5 of 156

Similar Datasets

Genome-wide SNP data of Chinese indigenous horse breed (additional horse samples)

Project description:The Origin of a Coastal Indigenous Horse Breed in China Revealed by Genome-Wide SNP Data

2019-03-16 | GSE128373 | GEO

Genome-wide SNP data of Chinese indigenous horse breed (Jinjinag horse samples)

Project description:The Origin of a Coastal Indigenous Horse Breed in China Revealed by Genome-Wide SNP Data

2019-03-16 | GSE128374 | GEO

Genome-wide SNP data of Chinese indigenous horse breed (264 Chinese horse breeds)

Project description:The Origin of a Coastal Indigenous Horse Breed in China Revealed by Genome-Wide SNP Data

2019-03-16 | GSE128372 | GEO

Gene expression variation in horse placental tissue, and resting and stimulated horse lymphocytes [Agilent-021322]

Project description:We undertook gene expression microarray experiments to identify genes that are differentially expressed in invasive (Chorionic Girdle) and non-invasive (Chorion) placental tissue, and resting and Pokeweed Mitogen (PWM) stimulated horse lymphocytes. Conceptus tissues were dissected to obtain chorionic girdle, and chorion. Freshly isolated horse peripheral blood lymphocytes were split and harvested immediately, or stimulated with PWM and harvested over a five day period. These experiments utilized a commercially available Agilent horse array that featured >43,000 probes on a 4x44k array format.

2012-02-14 | GSE35742 | GEO

Gene expression variation in horse placental and fetal tissue, and resting and stimulated horse lymphocytes

Project description:This SuperSeries is composed of the following subset Series: GSE35741: Gene expression variation in horse placental and fetal tissue, and resting and stimulated horse lymphocytes [Agilent-018932] GSE35742: Gene expression variation in horse placental tissue, and resting and stimulated horse lymphocytes [Agilent-021322] Refer to individual Series

2012-02-14 | E-GEOD-35743 | biostudies-arrayexpress

seppo horse

Project description:seppo horse

| PRJEB47977 | ENA

Gene expression variation in horse placental and fetal tissue, and resting and stimulated horse lymphocytes [Agilent-018932]

Project description:We undertook gene expression microarray experiments to identify genes that are differentially expressed in different placental and fetal tissue, and resting and Pokeweed Mitogen (PWM) stimulated horse lymphocytes. Conceptus tissues were dissected to obtain chorionic girdle, chorion, and fetal tissue. Freshly isolated horse peripheral blood lymphocytes were split and harvested immediately, or stimulated with PWM and harvested over a five day period. These experiments utilized a custom Agilent horse array designed in house that featured >14,000 probes on an 8x15k array format. Several genes were selected from the results for validation by quantitative real-time PCR. QPCR results matched the microarray results very closely.

2012-02-14 | GSE35741 | GEO

Horse feces

Project description:Horse fecal Metagenome

| PRJNA493817 | ENA

Genome-wide SNP data of Chinese indigenous horse breed (additional horse samples)

Project description:Genome-wide SNP data of Chinese indigenous horse breed (additional horse samples)

| PRJNA527287 | ENA

Genome-wide SNP data of Chinese indigenous horse breed (Jinjinag horse samples)

Project description:Genome-wide SNP data of Chinese indigenous horse breed (Jinjinag horse samples)

| PRJNA527294 | ENA