Genomics

Dataset Information

0

Deep Sequencing Analysis of miRNAs Expression in leg muscle of Xinghua Chicken


ABSTRACT: Purpose:We have used RNA-seq to examine of differentially expressed miRNAs in chicken leg muscle of three different development stages (11 embryo ages, 16 embryo ages, and 1 day old post hatch chick).The aims of this study are characterization of miRNAs differentially expressed in different developmental stage of chicken embryo, using RNA sequence sample. Methods: On this study we used two embryonic stage and one post hatch chick leg muscle of Xinghua chicken breed. Total RNA from E11 day embryo, E16 day embryo and 1 day post hatch chick was isolated by TRIzol following the manufacturer’s protocol (Invitrogen, CA, USA). Each stages were designed two samples, and the total samples were six (three group × two sample/group) and RNA samples of six individuals were pooled with equal amounts, and then were subjected to Illumina deep sequencing. Results: After eliminating adaptor and low-quality reads, a total of 5,302,700, 6,556,747, 5,359,793, 4,213,112, 7,112,885 and 7,469,939 clean reads were obtained in group E11 (E11.1-E11.2), group E16 (E16.1-E16.2) and group P1 (P1.1–P1.2) libraries, respectively. The clean reads were aligned to the chicken genome databases, miRBase, Rfam, RepBase and mRNA. Conclusions:To assess miRNA expression during chicken embryo skeletal muscle development, we sequenced and analyzed leg muscle at 11 day embryo age, 16 day embryo age, and 1 days post hatch.

ORGANISM(S): Gallus gallus

PROVIDER: GSE100321 | GEO | 2017/06/22

SECONDARY ACCESSION(S): PRJNA391315

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2016-11-01 | GSE89355 | GEO
2016-12-13 | GSE91060 | GEO
2012-04-17 | E-GEOD-37360 | biostudies-arrayexpress
2009-04-04 | E-GEOD-15413 | biostudies-arrayexpress
2016-08-18 | GSE65938 | GEO
2021-12-21 | GSE189566 | GEO
2008-01-31 | GSE9399 | GEO
2008-01-31 | GSE9474 | GEO
2008-01-31 | GSE9473 | GEO
2008-01-31 | GSE9472 | GEO