Transcriptomics

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Hedgehog gradient in the stroma maintains niche diversity and organ function [RNA-seq]


ABSTRACT: We disrupted the spatial Hh activation gradient in murine lung by inducing the constitutively active form of the Hh effector, Smo (SmoM2), throughout the entire GLI2+ stroma and performed RNA-seq on the bulk GLI2+ population. Whole adult murine lung tissue was dissociated to single cells and subjected to fluorescence activated cell sorting (FACS) to select all live GLi2+ cells. The bulk RNA-sequencing library was then subsequently generated. Cells were sequenced at a depth of average of 45 million reads/sample. The results reveal that expansion of Hh activation in the GLI2+ domain in the murine lung resulted in upregulation of genes that are expressed in the proximal stroma fibroblasts. Conversely, Hh activation downregulated genes enriched in the distal stroma as well as mesothelial cells.

ORGANISM(S): Mus musculus

PROVIDER: GSE102589 | GEO | 2018/08/08

REPOSITORIES: GEO

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