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Characterization of transcriptional and epigenetic changes during mouse alternative macrophage polarization [ATAC-Seq]

ABSTRACT: The molecular basis of signal-dependent transcriptional activation has been extensively studied in macrophage polarization, however our understanding remains limited regarding the molecular determinants of repression. Here we showed that IL-4-activated STAT6 transcription factor is required for the direct transcriptional repression of a large number of genes during mouse alternative macrophage polarization. Repression results in decreased lineage-determining transcription factor, p300 coactivator and RNA polymerase II binding followed by reduced enhancer RNA expression, H3K27 acetylation and chromatin accessibility. In addition, STAT6-repressed enhancers showed extensive overlap with the NF-κB p65 transcription factor cistrome and exhibited decreased responsiveness to lipopolysaccharide after IL-4 stimulus on a subset of genes.

ORGANISM(S): Mus musculus

PROVIDER: GSE106702 | GEO | 2017/11/10

REPOSITORIES: GEO

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Characterization of transcriptional and epigenetic changes during mouse alternative macrophage polarization [GRO-Seq]

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