Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Analysis of somatic copy number alterations in ApcΔ716 mouse intestinal tumors [aCGH]

ABSTRACT: To detect somatic copy number alterations in APC mutant tumors, we analyzed intestinal tumors from heterozygous ApcΔ716 mice, in which polyposis initiates upon loss of heterozygosity without losing the mutant allele (Proc Natl Acad Sci U S A. 1995 May 9;92(10):4482-6).

ORGANISM(S): Mus musculus

PROVIDER: GSE107777 | GEO | 2020/11/30

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Shared Molecules

Only show the datasets with similarity scores above: 0.5

Threshold

0.5

Similar Datasets

psbs_vs_WT

Project description:Series of 6 repetitions of hybridization of treatment (psbs) and control (WT) each. Comparison of the Arabidopsis psbs mutant lacking Photosystem I protein PSII-S versus WT. X.P. Li et al., Proc Natl Acad Sci U S A 99 (2002), pp. 15222-15227 Keywords: repeat sample

2005-01-01 | GSE1245 | GEO

Gene expression profiles of mouse back skin during the hair growth cycle

Project description:Identification of hair cycle-associated genes from time-course gene expression profile data by using replicate variance. Proc. Natl. Acad. Sci. USA. (2004) Keywords: time-course

2004-11-05 | GSE1912 | GEO

fluD_vs_WT

Project description:Series of 6 repetitions of hybridization of treatment (fluD) and control (WT) each. Comparison of Arabidopsis flu mutant lacking FLU, a regulator of chlorophyll biosynthesis, versus WT. Both harvested after a period of 12 h darkness. R. Meskauskiene et al., Proc Natl Acad Sci U S A 98 (2001), pp. 12826-12831 Keywords: repeat sample

2005-01-01 | GSE1183 | GEO

Breast tumors

Project description:Additional experiments used for intrinsic gene selection. Sorlie et al. Proc Natl Acad Sci U S A. 2001 Sep 11;98(19):10869-74. This Series accompanies Series GSE4335. Experiments that were used to make the "intrinsic" gene list from. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Keywords: Logical Set

2006-03-07 | GSE4336 | GEO

fluL_vs_WT

Project description:Series of 6 repetitions of hybridization of treatment (fluL) and control (WT) each. Comparison of Arabidopsis flu mutant lacking FLU, a regulator of chlorophyll biosynthesis versus WT. Both harvested 30' after reexposure to light after 12h dark period. R. Meskauskiene et al., Proc Natl Acad Sci U S A 98 (2001), pp. 12826-12831 Keywords: repeat sample

2005-01-01 | GSE1184 | GEO

gun5_vs_WT

Project description:Series of 8 repetitions of hybridization of treatment (gun5) and control (WT) each. Comparison of Arabidopsis gun5 mutant lacking a ChlH subunit of Mg-chelatase versus WT. R.E. Susek et al., Cell 74 (1993), pp. 787-799; N. Mochizuki et al., Proc Natl Acad Sci U S A 98 (2001), pp. 2053-2058 Keywords: repeat sample

2005-01-01 | GSE1186 | GEO

destructin-1 related files

Project description:This is a training data set for destructin-1 protease digestion of a synthetic peptide library for substrate specificity profiling. Data is related to the following publication: O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ. "Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome." Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):7478-83. doi: 10.1073/pnas.1507082112. Epub 2015 May 5. Erratum in: Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):E3152. PMCID: PMC4475985.

2015-11-24 | MSV000079388 | MassIVE

PRC2 in Ewing tumors

Project description:We found the PRC2 component EZH2 to be upregulated by the pathognomonic fusion oncogene EWS-FLI1 in Ewing tumors and mesenchymal stem cells (Richter GH et al., Proc Natl Acad Sci U S A. 2009;106:5324-9). Downregulation of EZH2 by RNA interference in Ewing tumor cell lines suppressed oncogenic transformation in vitro and in vivo. These data suggest that EZH2 might play a central role in Ewing Tumor pathology.

2009-04-29 | GSE15757 | GEO

psbs_vs_WT

2010-06-10 | E-GEOD-1245 | biostudies-arrayexpress

Effect of TUC338 knockdown on gene expression

Project description:The ultraconserved RNA TUC338 is expressed in hepatocellular cancer and can modulate cell proliferation. Details are provided in Braconi et al,Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):786-91. In this analysis, we knocked down TUC338 in HepG2 cells and analyzed gene expression.

2018-02-09 | GSE110259 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data