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Oryza sativa Argonaute 18 is a regulator of male sterility (RNA-Seq)

ABSTRACT: Artificial miRNA mediated knock-down ago18 transgenic lines [ago18(1), ago18(2)] showed developmentally compromised phenotype in both vegetative and reproductive tissues compared to wild-type control. We have performed RNA seq to investigate underlying molecular mechanism and to reveal functional role of AGO18 in rice.

ORGANISM(S): Oryza sativa

PROVIDER: GSE107903 | GEO | 2018/01/15

SECONDARY ACCESSION(S): PRJNA421905

REPOSITORIES: GEO

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Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)

Project description:Artificial miRNA mediated knock-down ago18 transgenic lines [ago18(1), ago18(2)] showed developmentally compromised phenotype in both vegetative and reproductive tissues compared to wild-type control. We have performed small RNA seq to investigate underlying molecular mechanism and to reveal functional role of AGO18 in rice.

2018-01-15 | GSE107904 | GEO

Role of rice AGO17 in rice development

Project description:Artificial miRNA mediated knock-down ago17 transgenic lines showed developmentally compromised phenotype in both vegetative and reproductive tissues compared to wild-type control, whereas the overexpression of AGO17 enhanced plant growth and yield. We have performed small RNA seq to investigate underlying molecular mechanism and to reveal functional role of AGO17 in rice.

2020-09-30 | GSE144110 | GEO

Mapping five novel interspecific hybrid sterility loci between Oryza sativa and Oryza meridionalis.

Project description:Oryza meridionalis is a potential source for improving Asian cultivated rice O. sativa via direct hybridization and backcrossing. However, hybrid sterility between O. sativa and O. meridionalis is the main barrier of reproduction hindering the transfer of favorable genes from O. meridionalis to O. sativa. To investigate the nature of hybrid sterility between O. sativa and O. meridionalis, three accessions of O. meridionalis were used as male parents to cross Dianjingyou 1, an O. sativa subsp. japonica cultivar following the backcross with the recurrent parent of Dianjingyou 1. Twenty pollen sterility NILs (BC6F1) were obtained and genotyped by using simple sequence repeat (SSR) markers distributed across the 12 rice chromosomes. The heterozygous markers were employed to genotype the corresponding segregation populations for mapping sterility genes. As a result, five novel loci for pollen sterility between O. sativa and O. meridionalis were identified and designated as S51(t), S52(t), S53(t), S54(t) and S55(t), respectively. The genetic behavior of five novel loci followed one-locus allelic interaction model. The disharmonious interaction between Asian cultivated rice allele and wild relative allele led to the partial or full abortion of male gametes for one parent allele in the heterozygotes. These results will be useful for elucidating the mechanism of interspecific hybrid sterility and further utilizing favorable genes from O. meridionalis for enhancement of rice breeding.

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Mapping of S56(t) responsible for interspecific hybrid sterility between Oryza sativa and Oryza glumaepatula.

Project description:Oryza glumaepatula originates from South America continent and contains many valuable traits, such as tolerance to abiotic stress, high yield and good cooking qualities. However, hybrid sterility severely hindered the utilization of favorable genes of O. glumaepatula by interspecific hybridization. In order to further understand the nature of hybrid sterility between O. sativa and O. glumaepatula, a near isogenic line (NIL) was developed using a japonica variety Dianjingyou 1 as the recurrent parent and an accession of O. glumaepatula as the donor parent. A novel gene S56(t) for pollen sterility was mapped into the region between RM20797 and RM1093 on the short arm of chromosome 7, the physical distance between the two markers was about 469 kb. The genetic behavior of S56(t) followed one-locus allelic interaction model, the male gametes carrying the alleles of O. sativa in the heterozygotes were aborted completely. These results would help us clone S56(t) gene and understand the role of S56(t) in interspecific sterility.

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Genetic analysis of a hybrid sterility gene that causes both pollen and embryo sac sterility in hybrids between Oryza sativa L. and Oryza longistaminata.

Project description:Oryza longistaminata originates from African wild rice and contains valuable traits conferring tolerance to biotic and abiotic stress. However, interspecific crosses between O. longistaminata and Oryza sativa cultivars are hindered by reproductive barriers. To dissect the mechanism of interspecific hybrid sterility, we developed a near-isogenic line (NIL) using indica variety RD23 as the recipient parent and O. longistaminata as the donor parent. Both pollen and embryo sac semi-sterility were observed in F1 hybrids between RD23 and NIL. Cytological analysis demonstrated that pollen abortion in F1 hybrids occurred at the early bi-nucleate stage due to a failure of the first mitosis in microspores. Partial embryo sacs in the F1 hybrids were defective during the functional megaspore formation stage. Most notably, nearly half of the male or female gametes were aborted in heterozygotes S40iS40l, regardless of their genotypes. Thus, S40 was indicated as a one-locus sporophytic sterility gene controlling both male and female fertility in hybrids between RD23 and O. longistaminata. A population of 16 802 plants derived from the hybrid RD23/NIL-S40 was developed to fine-map S40. Finally, the S40 locus was delimited to an 80-kb region on the short arm of chromosome 1 in terms with reference sequences of cv. 93-11. Eight open reading frames (ORFs) were localized in this region. On the basis of gene expression and genomic sequence analysis, ORF5 and ORF8 were identified as candidate genes for the S40 locus. These results are helpful in cloning the S40 gene and marker-assisted transferring of the corresponding neutral allele in rice breeding programs.

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Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)

Project description:Oryza sativa Argonaute 18 is a regulator of male sterility (sRNA-Seq)

| PRJNA421904 | ENA

Oryza sativa Argonaute 18 is a regulator of male sterility (RNA-Seq)

Project description:Oryza sativa Argonaute 18 is a regulator of male sterility (RNA-Seq)

| PRJNA421905 | ENA

Cytoplasmic Male Sterility-Associated Mitochondrial Gene orf312 Derived from Rice (Oryza sativa L.) Cultivar Tadukan.

Project description:BackgroundCytoplasmic male sterility (CMS) is a trait associated with non-functional pollen or anthers, caused by the interaction between mitochondrial and nuclear genes.FindingsA Tadukan-type CMS line (TAA) and a restorer line (TAR) were obtained by successive backcrossing between the Oryza sativa cultivars Tadukan (a cytoplasmic donor) and Taichung 65 (a recurrent pollen parent). Using Illumina HiSeq, we determined whole-genome sequences of the mitochondria of TAA and screened the mitochondrial genome for the presence of open reading frame (orf) genes specific to this genome. One of these orf genes, orf312, showed differential expression patterns in TAA and TAR anthers at the meiotic and mature stages, with transcript amounts in TAR being less than those in TAA. The orf312 gene is similar to the previously described orf288, a part of which is among the components comprising WA352, a chimeric CMS-associated gene of wild-abortive-type CMS.ConclusionsThe orf312 gene is a promising candidate for CMS-associated gene in TAA.

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RNAi mediated silencing of a wall associated kinase, OsiWAK1 in Oryza sativa results in impaired root development and sterility due to anther indehiscence: Wall Associated Kinases from Oryza sativa.

Project description:The Wall-Associated Kinase, one of the receptor-like kinase (RLK) gene families in plant, plays important roles in cell expansion, pathogen resistance and heavy metal stress tolerance in Arabidopsis thaliana. Here, we isolated a cDNA encoding a novel WAK from indica rice and designated as OsiWAK1 (Oryza sativa indica WAK-1). In this study, the RNAi construct with OsiWAK1 gene cloned in sense and antisense orientation separated by a functional intron under constitutive promoter, was introduced through biolistic gene gun method into the rice cultivar "IR-50" to determine the effect of OsiWAK1 transcript silencing on rice plant development. Examination of the transgenic plants reveals that OsiWAK1 transcript silencing in rice results in dwarf plants because of the reduction in the size of leaves, flag-leaves, internodes and panicle. The development of root primordia during germination, root hairs and lateral rooting was also effected. Microscopic analysis revealed that the decrease in size is due to reduction in the cell size but not the number of cells. In addition, the transgenic plants also exhibited sterile phenotype due to anther indehiscence and 40 % reduction in pollen viability. These data suggest that OsiWAK1 may play an important role in rice plant growth and development.

| S-EPMC3550565 | biostudies-literature

Oryza sativa

Project description:Rice expression atlas (4): Vegetative tissues

| PRJNA114551 | ENA