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'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine

ABSTRACT: Transcriptional profiling of Vitis vinifera cv. Chardonnay healthy vs. Phytoplasma-infected plants (Bois noir phytoplasma). Study was conducted on grapevine plants grown in the same vineyard (leaf midribs were sampled). Keywords: disease state analysis

ORGANISM(S): Vitis vinifera

PROVIDER: GSE10906 | GEO | 2008/03/21

SECONDARY ACCESSION(S): PRJNA107317

REPOSITORIES: GEO

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'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine

Project description:Transcriptional profiling of Vitis vinifera cv. Chardonnay healthy vs. Phytoplasma-infected plants (Bois noir phytoplasma). Study was conducted on grapevine plants grown in the same vineyard (leaf midribs were sampled). Keywords: disease state analysis Two-condition experiment: healthy vs. infected plants/shoots. Biological replicates: 4 healthy, 4 infected. No replicates. Each sample was prepared as a pool of several samples (each sample was collected from a different shoots/plants) of the same disease status. Each sample was co-hybridized to a common reference cRNA (pool of all samples).

2010-05-25 | E-GEOD-10906 | biostudies-arrayexpress

Transcription profiling of grapevine Vitis vinifera cultivars Chardonnay and Incrocio Manzoni naturally infected with Bois Noir phytoplasma compared to healthy samples

Project description:Transcriptional changes in field-grown plants of Vitis Vinifera cultivars 'Chardonnay' and 'Incrocio Manzoni' naturally infected with Bois Noir phytoplasma, compared to healthy samples. SUBMITTER_CITATION: Albertazzi G., Caffagni A., Milc J.A., Francia E., Roncaglia E., Ferrari F., Tagliafico E., Stefani E., Pecchioni N. (2009) Gene expression in grapevine cultivars in response to Bois Noir phytoplasma infection. Plant Science 176: 792-804. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Nicola Pecchioni. The equivalent experiment is VV14 at PLEXdb.] Experiment Overall Design: genotype: Chardonnay - disease type: Bois Noir infected(3-replications); genotype: Chardonnay - disease type: Healthy(3-replications); genotype: Incrocio Manzoni - disease type: Bois Noir infected(2-replications); genotype: Incrocio Manzoni - disease type: Healthy(2-replications)

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Gene expression in grapevine in response to Bois noir infection

Project description:Transcriptional changes in field-grown plants of Vitis Vinifera cultivars 'Chardonnay' and 'Incrocio Manzoni' naturally infected with Bois Noir phytoplasma, compared to healthy samples. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Nicola Pecchioni. The equivalent experiment is VV14 at PLEXdb.]

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A microarray analysis highlights the role of tetrapyrrole pathways in grapevine responses to stolbur phytoplasma, phloem virus infections and recovered status

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Project description:RNA-seq was used to assess gene expression variation in transgenic calli lines expressing Vitis vinifera chardonnay VvSWEET10 gene.

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Project description:Transcriptome analysis of red vs white berry skin parts of variegated Vitis vinfera ‘Bequignol Noir’ berries.

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