Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression analyses of GI eosinophils and macrophages from naive colons and intra-tumor

ABSTRACT: RNA-seq was performed on eosinophlis/macrophages isolated from colons of naive or tumor bearing C57/BL6 mice.

ORGANISM(S): Mus musculus

PROVIDER: GSE112922 | GEO | 2020/01/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Gene expression analyses of GI eosinophils under homeostatic conditions

Project description:RNA-seq was performed on eosinophils isolated from colons of naive C57/BL6 mice.

2018-10-01 | GSE106213 | GEO

Gene expression analyses of GI eosinophils and macrophages from naive colons and intra-tumor

Project description:Gene expression analyses of GI eosinophils and macrophages from naive colons and intra-tumor

| PRJNA449510 | ENA

Transcription profiling of nouse intestinal epithelial cells of germ-free versus wildtype mice

Project description:Gene expression was analyzed in intestinal epithelial cells of germ-free and wildtype mice. Experiment Overall Design: Ileums and proximal colons of 4 C57/Bl6 control and 4 C57/BL6 germ-free mice were collected and embedded in OCT. Tissue sectioned (10 mikroM) and laser capture microscopy was performed using a Zeiss/Palm laser capture system. Total RNA was extracted from about 16000 cells of the catapulted samples using RNA microprep kit (Stratagene). These 16 000 cells derive from all 4 animals (pooled approx. 4 000 cells from each mouse). We retrieved between 50 and 150 ng total RNA. Fourty ng total RNA was expanded by two rounds of in vitro cRNA amplification and affymetrix genechip Moe403 were probed at the Swegene Resource Center Lund, Sweden. Array data analysis was performed using dCHIP2004 software.

2009-09-13 | E-GEOD-13908 | biostudies-arrayexpress

Mouse slurry colons 2 weeks

Project description:Mouse slurry colons 2 weeks

| PRJNA827784 | ENA

ATAC-seq in mouse skeletal muscle

Project description:We perfomed ATAC-seq on C57/Bl6 mouse skeletal muscle nuclear extracts

2020-10-01 | GSE151790 | GEO

ATAC-seq of embryonic motor neurons

Project description:ATAC-seq of Hb9:GFP e10.5 spinal motor neurons from C57/Bl6 mice

2021-06-18 | GSE178466 | GEO

A Molecular Profile of the Endothelial Cell Response to Ionizing Radiation

Project description:Sorted VE-Cadherin+ endothelial cells from C57/Bl6 mice at different time points following total body irradiation.

2019-12-11 | GSE141790 | GEO

Mus musculus strain:C57/BL6

Project description:Mus musculus strain:C57/BL6

| PRJNA978380 | ENA

Spatiotemporally resolved ex vivo colorectal cancer development in engineered mini-colons (scRNA-Seq)

Project description:Here we developed topobiologically complex mini-colons able to undergo tumorigenesis ex vivo by integrating microfabrication, optogenetic, and tissue engineering approaches. With this system, tumorigenic transformation can be spatiotemporally controlled by directing oncogenic activation through blue-light exposure, and emerging colon tumors can be tracked in real-time with single-cell resolution for several weeks without breaking the culture. These induced mini-colons display rich intra- and inter-tumoral diversity and recapitulate key pathophysiological hallmarks displayed by colorectal tumors in vivo. By fine-tuning cell-intrinsic and extrinsic parameters, mini-colons can be leveraged to unveil tumorigenic determinants, including dietary patterns, microbiota-derived metabolites, and pharmacological therapies.

2024-02-24 | GSE221162 | GEO

FEC + OV treatment of TNBC tumors

Project description:E0771 subcutaneous tumors in C57/Bl6 mice were treated with saline, FEC (chemotherapy), oHSV-1 (oncolytic virus) or FEC + oHSV-1

2021-06-21 | GSE152698 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data