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Suppressing the barley uroporphyrinogen gene by Ds activation tagging element generates developmental photosensitivity

ABSTRACT: Chlorophyll production involves the synthesis of photoreactive intermediates that are toxic when in excess due to the production of reactive oxygen species (ROS). A novel activation tagged barley mutant is described that results from antisense suppression of a uroporphyrinogen III synthase (Uros) gene, the product of which catalyses the sixth step in the synthesis of chlorophyll and heme. In homozygous mutant plants uroporphyrin(ogen) I accumulates by spontaneous cyclization of hydroxyl methylbilane, the substrate of Uros. Accumulation of this tetrapyrrole intermediate results in photosensitive cell death due to the production of reactive oxygen species. The efficiency of Uros gene suppression is developmentally regulated, being most effective in mature seedling leaves compared with newly emergent leaves. A comparison of RNA from mutant and wild type seedlings grown under 30% and 3% light, shows reduced transcript accumulation of a number of nuclear-encoded photosynthesis genes occurs in the mutant even under 3% light conditions. This is consistent with a retrograde plastid-nuclear signalling mechanism arising from Uros gene suppression. No evidence for a direct signalling role by uroporphyrin I was observed suggesting that nuclear gene transcriptional suppression was mediated by ROS accumulation.

ORGANISM(S): Triticum aestivum Hordeum vulgare

PROVIDER: GSE11776 | GEO | 2009/04/23

SECONDARY ACCESSION(S): PRJNA105963

REPOSITORIES: GEO

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Suppressing the barley uroporphyrinogen gene by Ds activation tagging element generates developmental photosensitivity

Project description:Chlorophyll production involves the synthesis of photoreactive intermediates that are toxic when in excess due to the production of reactive oxygen species (ROS). A novel activation tagged barley mutant is described that results from antisense suppression of a uroporphyrinogen III synthase (Uros) gene, the product of which catalyses the sixth step in the synthesis of chlorophyll and heme. In homozygous mutant plants uroporphyrin(ogen) I accumulates by spontaneous cyclization of hydroxyl methylbilane, the substrate of Uros. Accumulation of this tetrapyrrole intermediate results in photosensitive cell death due to the production of reactive oxygen species. The efficiency of Uros gene suppression is developmentally regulated, being most effective in mature seedling leaves compared with newly emergent leaves. A comparison of RNA from mutant and wild type seedlings grown under 30% and 3% light, shows reduced transcript accumulation of a number of nuclear-encoded photosynthesis genes occurs in the mutant even under 3% light conditions. This is consistent with a retrograde plastid-nuclear signalling mechanism arising from Uros gene suppression. No evidence for a direct signalling role by uroporphyrin I was observed suggesting that nuclear gene transcriptional suppression was mediated by ROS accumulation. Two replicates samples were used for barley mutant 70a3 grown under 3% and 2 replicate sample of the mutant grown under 30% light, barley cv Golden Promise was used as the control.

2009-04-23 | E-GEOD-11776 | biostudies-arrayexpress

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2023-04-15 | GSE225476 | GEO

A specific protective mechanism against chloroplast photo-reactive oxygen species in phosphate-starved rice plants [RNA-seq]

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Effect of AAF overexpression on the leaves before bolting

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Transcriptome analysis in petals and leaves of chrysanthemums with different chlorophyll levels

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High REDOX RESONSIVE TRANSCRIPTION FACTOR1 levels result in accumulation of reactive oxygen species in Arabidopsis thaliana shoots and roots [mature leaves]

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2015-04-23 | E-GEOD-64853 | biostudies-arrayexpress

Effect of AAF overexpression on the leaves before bolting

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2010-09-30 | E-GEOD-18336 | biostudies-arrayexpress

Deletion of the gene family of small chlorophyll-binding proteins (ScpABCDE) offsets C/N homeostasis in synechocystis PCC 6803

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2015-03-30 | GSE59371 | GEO

Molecular and Physiological Responses of Citrus sinensis Leaves to Long-term Low pH Revealed by RNA-Seq Integrated with Targeted Metabolomics

Project description:Low pH-induced alterations in gene expression profiles and organic acids (OAs) and free amino acids (FAAs) abundances were investigated in Citrus sinensis leaves. We identified 503 downreg-ulated and 349 upregulated genes in low pH-treated leaves. Further analysis indicated that low pH impaired light reaction and carbon fixation in photosynthetic organisms, thereby lowering photosynthesis in leaves. Low pH reduced carbon and carbohydrate metabolisms, OAs biosyn-thesis and ATP production in leaves. Low pH downregulated the biosynthesis of nitrogen com-pounds, proteins and FAAs in leaves, which might be conducive to maintaining energy homeo-stasis during ATP deprivation. Low pH-treated leaves displayed some adaptive responses, in-cluding phosphate recycling, lipid remodeling and phosphate transport. Low pH upregulated the expression of some reactive oxygen species (ROS) and aldehyde detoxifying enzyme (peroxidase and superoxidase) genes and the concentrations of some antioxidants (L-tryptophan, L-proline, nicotinic acid, pantothenic acid and pyroglutamic acid), but it impaired pentose phosphate pathway, VE and secondary metabolite biosynthesis, downregulated the expression of some ROS and aldehyde detoxifying enzyme (ascorbate peroxidase, aldo-keto reductase and 2-alkenal re-ductase) genes and the concentrations of some antioxidants (pyridoxine and γ-aminobutyric acid), thus disturbing the balance between production and detoxification of ROS and aldehydes and causing oxidative damage to leaves.

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High REDOX RESONSIVE TRANSCRIPTION FACTOR1 levels result in accumulation of reactive oxygen species in Arabidopsis thaliana shoots and roots

Project description:Redox Responsive Transcription Factor1 (RRTF1) in Arabidopsis is rapidly and transiently upregulated by H202, as well as biotic and abiotic induced redox signals. Inactivation of RRTF1 restricts and overexpression promotes reactive oxygen species (ROS) accumulation in response to stress. Overexpressor (oe) lines are impaired in root and shoot development, light sensitive and susceptible to Alternaria brassicae infection. These symptoms are diminished by the beneficial root endophyte Piriformospora indica which reduces ROS accumulation locally in roots and systemically in shoots, and by antioxidants and ROS inhibitors which scavenge ROS. More than 850 stress-, redox-, ROS regulated-, ROS scavenging-, defense-, cell death- and senescence-related genes are regulated by RRTF1, ~ 30% of them have ROS related functions. Bioinformatic analyses and in vitro DNA binding assays demonstrate that RRTF1 binds to GCC-box and GCC-box like sequences in the promoter of RRTF1-responsive genes. Upregulation of RRTF1 by stress stimuli as well as H2O2 requires WRKY18/40/60. RRTF1 is co-regulated with the phylogenetically related RAP2.6, which contains GCC-box like sequene in its promoter, but RAP2.6 oe lines do not accumulate higher ROS levels. RRTF1 stimulates systemic ROS accumulation in distal non-stressed leaves. We conclude that the highly conserved RRTF1 rapidly, transiently and systemically induce ROS accumulation in response to ROS and ROS-producing abiotic and biotic stress signals. Necrotrophs stimulate RRTF1 expression, while symbiotic interactions of Arabidopsis with (hemi)-biotrophs and P. indica do not affect or repress RRTF1 expression. The seedlings were grown on MS medium with 1.37% sucrose under short day conditions and low light intensity (30 µmol m-2s-1) at 20˚C for 14 days. Transcriptome analysis was performed for the rrtf1 knock-out line and a RRTF1-overlexpressor line (called oe18) in comparison to wild-type seedlings.

2015-04-23 | E-GEOD-64783 | biostudies-arrayexpress

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