Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression profiling of the whole mouse brain at 3 days post-natal age using transcriptome tomography

ABSTRACT: We developed a novel framework to assess comprehensive endogenous gene expression maps in a broad and isotropic 3D-anatomical context using a relatively small number of original data points: transcriptome tomography. Using this method, we produced a dataset of gene expression maps of the whole mouse brain at 3 days after birth, computationally reconstructed from fraction data.

ORGANISM(S): Mus musculus

PROVIDER: GSE118176 | GEO | 2018/08/07

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Gene expression profiling of the whole mouse brain at 7 days post-natal age using transcriptome tomography

2018-08-07 | GSE118177 | GEO

Gene expression profiling of the whole mouse brain at 3 weeks of post-natal age using transcriptome tomography

2018-08-07 | GSE118178 | GEO

Gene expression profiling of the whole mouse brain using transcriptome tomography

2012-09-21 | GSE36408 | GEO

Gene expression profiling of the whole mouse brain using transcriptome tomography

Project description:We developed a novel framework to assess comprehensive endogenous gene expression maps in a broad and isotropic 3D-anatomical context using a relatively small number of original data points: transcriptome tomography. Using this method, we produced a dataset of gene expression maps of the whole mouse brain, computationally reconstructed from fraction data. A total of 61 fraction samples obtained with body axes-based slicing preparation conjugated with anatomical image acquisition were analysed. There are two sets of body axes-based preparation series: the S series, composed of 9 fractions/ C of 13 fractions/ H of 6 fractions , and the So series, composed of 10 fractions/ Co of 16 fractions/ Ho of 7 fractions.

2012-09-21 | E-GEOD-36408 | biostudies-arrayexpress

Gene expression profiling of the whole mouse brain at 3 days post-natal age using transcriptome tomography

Project description:Gene expression profiling of the whole mouse brain at 3 days post-natal age using transcriptome tomography

| PRJNA484768 | ENA

Gene expression profiling of the whole mouse brain at 7 days post-natal age using transcriptome tomography

Project description:Gene expression profiling of the whole mouse brain at 7 days post-natal age using transcriptome tomography

| PRJNA484771 | ENA

Genome-wide RNA tomography in the zebrafish embryo

Project description:Genome-wide RNA tomography in the zebrafish embryo

| PRJNA256975 | ENA

Epigenomic tomography for probing spatially-defined chromatin state in the brain

Project description:Here we demonstrate brain epigenomic tomography that is constructed via epigenomic profiling of mouse neocortex slices with sub-millimeter thickness using a low-input ChIP-seq technology. We profiled the variation in histone modification signal (H3K27me3 and H3K27ac) across these slices and grouped the spatial epigenomic features into clusters of various spatial variation patterns.

2023-10-18 | GSE215972 | GEO

ecafb65b-a9e1-4503-84d9-05f915ba11e9 - samples

Project description:Computationally reconstructed B-cell receptor sequences (using BraCeR) from scRNA-seq data for all cells passing quality control.

| EGAD00001008456 | EGA

Gene expression profiling of the whole mouse brain at 3 weeks of post-natal age using transcriptome tomography

Project description:Gene expression profiling of the whole mouse brain at 3 weeks of post-natal age using transcriptome tomography

| PRJNA484770 | ENA