Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Total RNA-seq of shRNA-mediated TARBP2 knockdown

ABSTRACT: To identify changes in splicing patterns following TARBP2 knockdown, RNA-sequencing was performed on breast cancer cells transduced with shRNAs targeting TARBP2.

ORGANISM(S): Homo sapiens

PROVIDER: GSE130869 | GEO | 2019/12/26

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:To identify changes in splicing patterns following TARBP2 knockdown, RNA-sequencing was performed on nuclear RNA extracted from cells expressing shRNAs targeting TARBP2 or a non-targeting shRNA (shControl).

2019-12-26 | GSE130870 | GEO

Total RNA-seq of siRNA-mediated TARBP2 knockdown

Project description:To identify changes in splicing patterns following TARBP2 knockdiwn, RNA-sequencing was performed on breast cancer cells transfected with siRNAs targeting TARBP2.

2019-12-26 | GSE130872 | GEO

Total RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:Total RNA-seq of shRNA-mediated TARBP2 knockdown

| PRJNA541848 | ENA

MeRIP-seq of control and TARBP2 knockdown cells

Project description:To identify changes in methylation patterns following TARBP2 knockdown, m6A-IP followed by RNA-seq was performed on breast cancer cells expressing shRNAs against TARBP2 (and non-targeting shControl cells).

2019-12-26 | GSE130893 | GEO

Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

Project description:Nuclear RNA-seq of shRNA-mediated TARBP2 knockdown

| PRJNA541853 | ENA

Total RNA-seq of siRNA-mediated TARBP2 knockdown

Project description:Total RNA-seq of siRNA-mediated TARBP2 knockdown

| PRJNA541854 | ENA

MeRIP-seq of control and TARBP2 knockdown cells

Project description:MeRIP-seq of control and TARBP2 knockdown cells

| PRJNA541917 | ENA

RNA-seq of human cancer cell line OVCA420* following TIGAR knockdown with shRNA

Project description:To identify differentially expressed genes following TIGAR knockdown, OVCA420* was transduced with TIGAR-targeting or non-targeting (control) shRNAs. 54 hours after the transduction, RNA was extracted and Illumina TruSeq RNA Sample Preparation Kit v2 was used to prepare the libraries. Each group contains 3 replicates. NextSeq 500 was used for sequencing.

2018-10-24 | E-MTAB-7284 | biostudies-arrayexpress

TARBP2 HITS-CLIP

Project description:In order to identify TARBP2 binding sites on endogenous RNA, we performed HITS-CLIP on a myc-tagged TARBP2 expressing cell-line (transient transfection)

2014-07-24 | GSE49648 | GEO

shRNA mediated knockdown of TRA2B and SRSF3 in HEK293 cell line

Project description:We have independently knocked down TRA2B and SRSF3 in HEK293 cells to identify the sum of alternative splicing changes that results from depletion of each factor. Each was compared to a control transfection of the hairpin vector alone. In this set, 9 total samples were analyzed. There were three biological replicates for each of three conditions: knockdown control, TRA2B knockdown and SRSF3 knockdown. Arrays were analyzed for gene expression using GeneBase and for alternative splicing using MADS+ and OmniViewer software.

2012-04-30 | E-GEOD-36069 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data