Transcriptomics

Dataset Information

0

Integrated analysis of microRNA and mRNA expression profiles of rice seedlings in response to zinc deficiency and recovery (mRNA-seq)


ABSTRACT: Using Illumina’s high-throughput small RNA sequencing and RNA sequencing, miRNAs and mRNAs differentially expressed under Zn deficiency and Zn resupply conditions were identified in shoots and roots of rice seedlings. A total of 68 miRNAs were identified to be differentially expressed under Zn deficiency and/or Zn resupply, and 38 of them were novel miRNAs. The Zn-responsive miRNAs were predicted to target a total of 799 genes. The transcriptome sequencing identified a total of 360 differentially expressed genes (DEGs) under Zn deficiency in shoots and roots, and 97 of them were recovered after Zn resupply treatment. Twelve DEGs were found to be potential targets genes of several Zn-responsive miRNAs like miR171g-5p, miR397b-5p, miR398a-5p, and miR528-5p.

ORGANISM(S): Oryza sativa

PROVIDER: GSE130980 | GEO | 2020/01/08

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2020-01-08 | GSE131003 | GEO
2024-10-30 | GSE280702 | GEO
2022-09-15 | GSE209594 | GEO
2019-03-30 | GSE111799 | GEO
2018-05-01 | GSE111443 | GEO
2022-09-15 | GSE209593 | GEO
2022-04-18 | GSE200863 | GEO
2021-01-13 | GSE138335 | GEO
2021-01-13 | GSE138334 | GEO
2014-11-01 | E-GEOD-58786 | biostudies-arrayexpress