Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of developing pods of CpFatB4- and CpFatB5-expressing transgenic Brassica napus

ABSTRACT: Differentially expressed genes in developing pods of CpFatB4- and CpFatB5- expressing transgenic Brassica napus in seed specific manner were investigated using RNA-seq method at 8, 25, and 45 days after fertilization

ORGANISM(S): Brassica napus

PROVIDER: GSE132071 | GEO | 2019/07/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Gene expression profiles during seed development and maturation in Brassica napus

Project description:Time course of gene expression profiles during seed development and maturation in Brassica napus were studied using Combimatrix Brassica microarray. The time course expression of 90K Brassica napus EST contigs were measured at 8 developing seed stages of 10, 15, 20, 25, 30, 35, 40 and 45 DAF (days after flowering) using single color microarray

2013-03-01 | E-GEOD-43918 | biostudies-arrayexpress

RNAseq of Brassica napus seed

Project description:mRNA expression profiling of the embryo, endosperm (micropylar, peripheral, chalazal), and seed coat (outer, inner, chalazal, chalazal proliferating tissue) of the developing Brassica napus seed. Tissues were isolated using laser microdissection (LMD) from Brassica napus seeds at the globular, heart, and mature green stages of seed development.

2024-07-15 | GSE271809 | GEO

Microarray expression analysis of the main inflorescence in B. napus

Project description:The effect of the number of pods on the main inflorescence (NPMIs) on seed yield in Brassica napus plants grown at high density is a topic of great economic and scientific interest. We sought to identify patterns of gene expression that are associated with inflorescence and PMI differentiation and development in Brassica napus.

2014-12-31 | GSE57886 | GEO

RNA-seq analysis of developing pods of CpFatB4- and CpFatB5-expressing transgenic Brassica napus

Project description:RNA-seq analysis of developing pods of CpFatB4- and CpFatB5-expressing transgenic Brassica napus

| PRJNA545838 | ENA

Brassica napus control vs. heat stress

Project description:High temperature stress results in yield loss and alterations to seed composition during seed filling in oilseed rape (Brassica napus). However, the mechanism underlying this heat response is poorly understood. In this study, we employed a microarray analysis with silique walls and seeds from the developing siliques (20 days after flowering) of Brassica napus that had undergone heat stress.

2015-01-05 | GSE57697 | GEO

Brassica napus control vs. heat stress

2015-01-05 | E-GEOD-57697 | biostudies-arrayexpress

Global analysis of lipid metabolism regulation in Brassica napus developing seeds

Project description:Gene expression profiles during seed development and fatty acid (FA) metabolism, as well as the relevant regulation, of Brassica napus were studied through multiple high-throughput genomic approaches. Serial Analysis of Gene Expression (SAGE) using seed materials obtained a total of 68,718 tags, of which 23,897 were unique and 503 tags were functionally identified, and revealed the transcriptome of approximately 35,000 transcripts in B. napus developing seeds. Further, ~22,000 independent ESTs were obtained by large-scale sequencing using immature embryos at different stages, and 8343 uni-ESTs and 3355 full-length cDNAs were identified respectively, resulting in the systemic identification of B. napus FA biosynthesis-related genes. Gene expression profiles were further studied employing cDNA chip hybridization to reveal the global regulatory network of FA metabolism in developing seeds. Together with the analysis on FA amounts and composition, it was shown that 17-21 days after pollination (DAP) was a crucial stage for transition of seed to sink tissue. High expressions of FA biosynthesis-related genes and transition of FA components are mainly at stages 21 DAP or 21-25 DAP respectively. In addition, compared to Arabidopsis, more critical roles of starch metabolism are detected for B. napus seed FA metabolism and storage components accumulation. Crucial effects of starch metabolism, carbon flux, oxidative pentose phosphate pathway (OPPP), photosynthesis, and other regulators in FA metabolism were discussed. Keywords: Brassica napus, immature seed, SAGE, EST, cDNA microarray

2008-02-26 | GSE7204 | GEO

Gene expression regulated by Transparent Testa16 in Brassica napus

Project description:To broadly identify genes regulated by Transparent Testa16 in Brassica napus

2014-12-13 | GSE37449 | GEO

Gene expression profiles during seed development and maturation in Brassica napus

Project description:Time course of gene expression profiles during seed development and maturation in Brassica napus were studied using Combimatrix Brassica microarray.

2013-03-01 | GSE43918 | GEO

Two's Company: Epigenome bias in the seed of the allopolyploid Brassica napus

Project description:Epigenome bias in the seed of the allopolyploid Brassica napus

2021-08-31 | GSE157372 | GEO