Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Investigation of heat stress response by RNA-Seq in Arabidopsis

ABSTRACT: To investigate genome-wide Arabidopsis TE release, we sequenced the wild-type Col-0 transcriptome under Control, Heat and Recovery conditions

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE132415 | GEO | 2020/03/25

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata

Project description:Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. To identify heat stress induced genes, we performed RNA-sequencing of rosette leaves from mock-treated, heat-stressed and heat-stressed-recoved plants of both species. Analysis of genetic element transcriptional changes in response to 6 hours of 37°C heat stress and 48 hours of recovery in Arabidopsis thaliana Col-0 and Arabidopsis lyrata MN47.

2015-08-01 | E-GEOD-69077 | biostudies-arrayexpress

Transcriptome response study of arabidopsis wild type (Col-0), ERF95 and ERF97 overexpression lines to basal heat stress

Project description:Analysis of transcriptome response of heat treated or untreated 7-day old whole seedlings with genotypes: Col-0 (wild type), p35S:ERF95 overexpression line and p35S:ERF97 overexpression line. ERF95 and ERF97 are involved in heat stress response. Results provide insight into the nuclear genes expression profile under heat treatment in Col-0, the nuclear genes expression profile regulated by either ERF95 and ERF97 overexpression before and after heat treatment, and the regulation similarity between ERF95 and ERF97 overexpression lines.

2020-11-19 | GSE137713 | GEO

Gene expression of Arabidopsis leaves under heat stress and during recovery

Project description:To understand plant adaptation to heat stress, gene expression profiles of Arabidopsis leaves under heat stress, during recovery and control condition were obtained using microarray. Microarray data listed responsible candidate genes for glycerolipid metabolism. Arabidopsis thaliana ecotype Columbia (Col-0) seeds were surface-sterilised and sown on an agar-solidified Murashige and Skoog medium. Plants were grown at 22ºC under a 16-h-light/8-h-dark cycle. Vegetative plants were subjected to high temperature for a day, then continued to be grown under normal condition for a day.

2015-05-27 | E-GEOD-63128 | biostudies-arrayexpress

Differential regulation of HSFA1s and HSFA2 after heat shock in Arabidopsis

Project description:HSFA1s are a gene family of HSFA1 with four members, HSFA1a, HSFA1b, HSFA1d, and HSFA1e. HSFA1s are the master regulators of heat shock response. As a part of the heat shock response, HSFA2 can prolong the heat shock response and amplify the heat shock response in response to repeat heat shock. To identify the heat-shock-responsive genes differentially regulated by HSFA1s and HSFA2, we compared the transcriptomic differences of plants containing only constitutively expressed HSFA1s or HSFA2 after heat stress. hsfa2 (the KO mutant of HSFA2, Col-0 background) and A2QK-10 (CaMV 35S:HSFA2 in QK mutant; QK is HSFA1a/b/d/e quadruple KO mutant) were used to compare the difference of heat shock response when plants lack HSFA1s or HSFA2. The aim is to find the HSFA1s- and HSFA2-preferred regulating genes after heat stress. As the control samples, wild type is the plant with normal heat shock response, and QK (HSFA1s KO mutant, Col-0 and Ws mixed background) is the plant that lost the heat shock response controlled by HSFA1s.

2013-04-09 | E-GEOD-44655 | biostudies-arrayexpress

Proteome turnover of Arabidopsis under heat stress: Shoot, replicate 3

Project description:Eight-day-old Col-0 wild-type seedlings were transferred onto media containing 15N-salts and under 30C heat stress from 0 to 48 hours. For the control group, seedlings were continuously grown at 22C after being transferred to the ATS medium with the normal nitrogen source (14N-medium). Root and shoot tissues were collected at different time points post-transfer and then subjected to differential centrifugation to isolate fractions enriched in organellar, soluble, or microsome-associated proteins for analysis by LC-MS/MS.

2024-05-23 | MSV000094845 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Root, replicate 3

2024-05-23 | MSV000094849 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Shoot, replicate 2

2024-05-23 | MSV000094853 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Root, replicate 1

2024-05-23 | MSV000094852 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Root, replicate 2

2024-05-23 | MSV000094851 | MassIVE

Proteome turnover of Arabidopsis under heat stress: Shoot, replicate 1

2024-05-23 | MSV000094850 | MassIVE