Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of the wild-type strain, mhy1Δ mutant and MHY1-overexpressing mutant strain.

ABSTRACT: To explore the cellular functions of Mhy1, how Mhy1 promotes filamentation, we wanted to identify genes that are transcriptionally controlled by Mhy1. To this end, RNA-Seq analysis was conducted in cells of wild-type strain, mhy1Δ mutant and wild-type strain overexpressing MHY1 grown in filament-inducing YNDC7 medium.

ORGANISM(S): Yarrowia lipolytica

PROVIDER: GSE133657 | GEO | 2020/09/30

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

The role of the C. albicans transcriptional repressor NRG1 during filamentation and disseminated candidiasis is strain-dependent

Project description:Clinical isolates of the human fungal pathogen Candida albicans show significant variation in their ability to undergo in vitro filamentation. In this study, we show that Nrg1, a key repressor of filamentation and filament specific gene expression in standard laboratory strain, has strain dependent functions, especially during infection.

2024-01-20 | GSE253732 | GEO

Transcription profiling of Ralstonia solanacearum hrpB mutant overexpressing hrpG vs wild type strain

Project description:1. Comparison of transcripts during growth in pure culture of a wild-type strain compared to a mutant deficient in the transcriptional activator encoded by the gene hrpG.<br><br>2. Transcriptome analysis for identification of the hrpG regulon by comparison of a rppG mutant to the wild type strain.<br><br>3. Transcriptome analysis comparing a hrpB mutant overexpressing hrpG to the wild type strain.

2006-05-01 | E-MEXP-579 | biostudies-arrayexpress

RNA-SEQ analysis of a C. albicans rim101-/- disrupted strain, a strain overexpressing RIM101 and a reference strain at both alkaline (7.6) and acidic (4) pH

Project description:The aim of the study was to compare the RNA-SEQ profiles of a wild type C. albicans strain (SC5314), a rim101-/- mutant strain (DAY25) and a strain overexpressing RIM101 (CGY1) at both alkaline (7.6) and acidic (4) pH, in order to identify Rim-dependent genes involved in tolerance to antifungals

2018-01-18 | GSE109291 | GEO

In vitro_PKS15-overexpressing strain

Project description:PKS15-overexpressing strain was inoculated into PDB for 7 days. The fungal cells were extracted with methanol.

2023-01-02 | MSV000090995 | MassIVE

Transcriptome analysis of Sinorhizobium meliloti strain ectopically overexpressing trpL

Project description:We show that the RNA leves of many genes in the S. meliloti overexpressing strain (OE) 2011 (pRK-RcsR1) are more similar to the levels of in wild type (WT) strain 2011 than in the empty vector control (EVC) strain 2011(pRK4352). Since the plasmid-containing strains were grown in the presence of 10 µg/ml tetracycline (Tc), while the WT was grown without Tc, the results suggest that the intrecellular Tc concentration in the OE strain are lower than in the EVC. This is explained by an increased efflux pump activity in the OE strain.

2020-05-18 | GSE118687 | GEO

Exoproteome of a furC-overexpressing strain: FurC tunes peptidoglycan remodeling and intercell transfer

Project description:To study the effect of FurC overexpression in the exoproteome composition of Anabaena, sp. PCC120, SWATH-MS analyses have been carried out with the isolated exoproteome of the FurC overexpressing strain, EB2770FurC (named in the present dataset "EB") comparing to the one of the wild-type strain (WT). This data togheter combined with physiological and functional studies of FurC protein revealed a potential role of this regulator in the modulation of general cell-wall biogenesis and recycling processes, as well as and in intercellular transfer.

2024-02-07 | PXD043659 | Pride

In vitro_PKS14-overexpressing strain

Project description:PKS14-overexpressing strain was inoculated into PDB for 7 days. The fungal cells were extracted with methanol, and the culture broth was extracted with ethyl acetate.

2023-01-02 | MSV000090990 | MassIVE

Transcription profiling of the wild-type strain, mhy1Δ mutant and MHY1-overexpressing mutant strain.

Project description:Transcription profiling of the wild-type strain, mhy1Δ mutant and MHY1-overexpressing mutant strain.

| PRJNA552089 | ENA

In vivo_PKS14-overexpressing strain

Project description:Fourth-instar larvae of beet armyworm were injected with conidial suspension of pks14-overexpressing strain. Inoculated larvae were collected on 3, 5, and 7 DPI. Crude extracts from the whole inoculated larvae were collected and extracted with methanol.

2023-01-02 | MSV000090992 | MassIVE

In vivo_PKS15-overexpressing strain

Project description:Fourth-instar larvae of beet armyworm were injected with conidial suspension of pks15-overexpressing strain. Inoculated larvae were collected on 3, 5, and 7 DPI. Crude extracts from the whole inoculated larvae were collected and extracted with methanol.

2023-01-03 | MSV000090997 | MassIVE

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data