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Functional subnetwork modules and discovery of hub genes with signal peptide using RNA-Seq (hybrid 33k44 vs. inbred B73)

ABSTRACT: We performed a systematic computational network-based analysis of large-scale F. verticillioides RNA-seq datasets to identify gene subnetwork modules associated with virulence and fumonisin regulation.

ORGANISM(S): Fusarium verticillioides

PROVIDER: GSE146208 | GEO | 2020/03/03

REPOSITORIES: GEO

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Functional subnetwork modules and discovery of hub genes with signal peptide using RNA-Seq (hybrid 33k44 vs. inbred B73)

Project description:Functional subnetwork modules and discovery of hub genes with signal peptide using RNA-Seq (hybrid 33k44 vs. inbred B73)

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Functional subnetwork modules and hub gene discovery using RNA-Seq (wild type Fusarium verticillioides and the FSR1 mutant)

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Project description:Investigation of whole genome gene expression level changes after 6 days growth of Fusarium verticillioides wild-type and LAE1 deletion mutant in liquid fumonisin inducing media (GYAM) Fusarium verticillioides produces a polyketide derived mycotoxin, fumonsin, over time in liquid media, Proctor et al, Co-expression of 15 contiguous genes delineates a fumonisin biosynthetic gene cluster in Gibberella moniliformis, Fungal Genetics and Biology, 38:237-249.

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Expression analysis of wild type Fusarium verticillioides cultured in liquid media

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