Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq of scallop mantle tissue

ABSTRACT: We produced RNA-seq data from mantle tissue of the King Scallop, Pecten maximus, and identified expression of pathways involved in pigmentation of the shell.

ORGANISM(S): Pecten maximus

PROVIDER: GSE147107 | GEO | 2020/09/17

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

RNA-seq of scallop mantle tissue

Project description:RNA-seq of scallop mantle tissue

| PRJNA613027 | ENA

Proteome of the mantle tissue of the Yesso scallop

Project description:Protiome of the mantle tissue of the Yesso scallop (Patinopecten yessoensis) is analysed based on the TMT labelling technology

2022-04-26 | PXD033456 |

Differential expression analysis of genes from the mantle tissue of pearl oyster: Pinctada maxima

2010-02-05 | GSE14303 | GEO

Pinctada fucata martensii mantle edge tissue LC-MS/MS

Project description:We have got a yellow shell variety of Pinctada fucata martensii after years of artificial breeding. To identify differentially expressed genes between yellow shell and normal black shell pearl oysters, we performed label-free proteomic analyses by LC-MS using mantle edge tissues.

2019-11-13 | PXD012211 | Pride

Differential expression analysis of genes from the mantle tissue of pearl oyster: Pinctada maxima

Project description:The mantle is a thin tissue from which proteins are secreted dictating the mollusk shell construction. As a conserved organ involved in shell formation throughout mollusks, the mantle is an excellent foundation from which to study biomineralization. A P. maxima mantle tissue specific cDNA microarray, termed PmaxArray 1.0, has been developed comprising 5000 cDNA transcripts derived from the mantle tissue of P. maxima. This tool has been used to investigate the spatial functional dynamics of the mantle tissue identifying over 2000 PmaxArray 1.0 spots as differentially expressed spatially within this organ. Gene expression profiles observed for these transcripts indicated 5 major spatial functions for the mantle, 3 of which have been putatively attributed to shell formation roles associated with nacre microstructure, calcite prismatic microstructure and periostracum. These transcripts are further examined with in situ expression localization and comparative sequence analyses in reference to potential shell formation roles. This spatial investigation has expedited the elucidation of functions within the dynamic mantle organ, paying particular attention to of shell biomineralization. Keywords: Spatial expression profiling by array The mantle tissue from 9 animals was dissected into 5 separate sections: outer fold (OF), middle fold (MF), inner fold (IF), ventral mantle tissue (VM) and dorsal mantle tissue (DM). Total RNA was extracted from these tissues and pooled across subjects in order to reduce the effect of biological variation; such that 3 individuals were pooled together totaling 3 pooled replicate samples for each tissue. All the biologically pooled tissue types were compared against a common reference in which total RNA from all tissues types and all nine animals was equally pooled. A total of 30 dual channel microarrays hybridizations were performed and analyzed.

2010-05-15 | E-GEOD-14303 | biostudies-arrayexpress

Project description:Pecten maximus (King scallop)

| PRJNA704533 | ENA

xPecMax1

Project description:Pecten maximus (king scallop)

| PRJEB35331 | ENA

Transcriptomic features of Pecten maximus oocyte quality and maturation

Project description:The king scallop Pecten maximus is a high valuable species of great interest in Europe for both fishery and aquaculture. However, hatchery production is a relatively new industry and it is still underdeveloped. Major hurdles are spawning control and gamete quality. In the present study, a total of 14 scallops were sampled in the bay of Brest (Brittany, France) to compare transcriptomic profiles of mature oocytes collected by spawning induction or by stripping. To reach such a goal, a microarray analysis was performed by using a custom 8x60K oligonucleotide microarray

2017-02-06 | GSE90679 | GEO

xPecMax1

Project description:Pecten maximus (king scallop) genome assembly, xPecMax1

| PRJEB35330 | ENA

Lymnaea shell proteomics - Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas

Project description:The calcifying matrix proteins embedded within the shell biomineral structure is a mixture of proteins, glycoproteins, and polysaccharides that are involved in the shell formation processes. Here with develop bottom-up shotgun proteomic investigation of these proteins, thanks to specific transcriptomic data generated from the calcifying mantle of adult Lymnaea.

2018-04-05 | PXD008547 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data