Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Profiling the repo>+ (control) and repo>AmaRNAi knockdown third instar Drosophila brains using Drop-seq (single cell RNA-seq)

ABSTRACT: We characterized the glial cells in the Drosophila third instar brain using single cell RNA-seq and compared a Ama knockdown glia to the control. The results identified defects in surface glia, an increase in infiltrating hemocytes, and a novel Ama knockdown cluster defined by sty.

ORGANISM(S): Drosophila melanogaster

PROVIDER: GSE147688 | GEO | 2020/09/14

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Single cell transcriptional profile of third instar larval wing discs in Drosophila using drop-seq (single cell RNA-seq)

Project description:Our study focuses on understanding the early transcriptional changes taking place during the divergence of the adult muscle precursors that give rise to indirect flight muscles and direct flight muscles in Drosophila. We analyzed the heterogenous cell population of the adult muscle precursors by scRNA-seq and build an integrated single-cell reference atlas. We addressed the differences among muscle-type and different cell state during myoblast differentiation. Also, our dataset includes the transcriptional profile of the epithelial cells localized in the presumptive hinge and notum of third instar larval wing discs. In addition we studied the functional relevance of Amalgam in flight muscle development by depleting Ama expression specifically in the adult muscle precursors. We determined the transcriptional changes and perturbations in AMP cell identity upon Ama knockdown.

2020-07-12 | GSE138626 | GEO

Single cell transcriptional profile of third instar larval wing discs in Drosophila

2020-08-31 | E-MTAB-9444 | biostudies-arrayexpress

Gene Expression Profiles of Drosophila third instar larvae hemocytes to explain hemocyte development.

2008-03-18 | GSE10853 | GEO

Transcription profiling of Drosophila third instar larvae hemocytes TO EXPLAIN hemocyte development.

Project description:We measured gene expression profiles of third instar larvae hemocytes from selected strains related to hemocyte development. Every strain was purchased from commercial companies. And we used microarray data to find what biological processes show abnormalities first, and which gene expressions show similarities and differences between selected strains. Experiment Overall Design: 200~300 Drosophila third instar larvae hemocytes from each of five lines were dissected to get at least 1 microgram of total RNA. Because all samples were hybridized to single-dye Affymetrix chip, control data were compared with data from each mutant.

2008-04-05 | E-GEOD-10853 | biostudies-arrayexpress

Pho and Ph, H3K27me3 and Engrailed ChIP-seq data in PRE-deleted third instar Drosophila larval brains and disks and 4C-seq data in the third instar larval brains and disks

Project description:Genome-wide binding profile of PcG proteins- Pho and Ph, H3K27me3 and Engrailed in Drosophila third instar larval brains and disks, in duplicate, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed.

2016-09-24 | GSE77341 | GEO

RNA-seq of Drosophila melanogaster neurons, glia and hemocytes at embryonic stage 16 and third instar wandering larvae

Project description:We produced bulk RNA sequencing data on Drosophila neurons, glia and hemocytes at embryonic and larval stages to extrapolate the most significant and specific features that identify a cell type as a whole. We also tracked changes in the expression in the two stages. We identified stable features that define a cell type functionally and developmentally as well as plastic features including stage-specific metabolic states, which likely depend on the environment.

2024-08-27 | E-MTAB-14413 | biostudies-arrayexpress

RNA-seq of Drosophila melanogaster neurons, glia and hemocytes at embryonic stage 16 and third instar wandering larvae

Project description:RNA-seq of Drosophila melanogaster neurons, glia and hemocytes at embryonic stage 16 and third instar wandering larvae

| PRJEB79719 | ENA

Profiling the repo>+ (control) and repo>AmaRNAi knockdown third instar Drosophila brains using Drop-seq (single cell RNA-seq)

Project description:Profiling the repo>+ (control) and repo>AmaRNAi knockdown third instar Drosophila brains using Drop-seq (single cell RNA-seq)

| PRJNA616110 | ENA

Pho and Ph, H3K27me3 and Cg ChIP-seq data in Drosophila third instar larval brains and discs

Project description:Genome-wide binding profile of PcG proteins- Ph, H3K27me3 and Cg in Drosophila third instar larval brains and disks, in duplicate, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed.

2016-03-31 | GSE77582 | GEO

Pho and Ph, H3K27me3 and Engrailed ChIP-seq data in Drosophila third instar larval brains and disks

Project description:Genome-wide binding profile of PcG proteins Pho and Ph, H3K27me3 and Engrailed in Drosophila third instar larval brains and disks, in duplicate, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed.

2016-04-01 | GSE76892 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data