Transcriptomics

Dataset Information

0

Transcriptomic analyses of co-treatment of AFB1 and curcumin in chicken liver


ABSTRACT: Purpose:In order to assess the toxicity of AFB1 in chicken liver and the mechanism of curcumin alleviating AFB1-induced liver toxicity in chicken, we established a co-administered model to investigate LncRNA and mRNA profiles of chicken liver. Methods: RNA extracted by Total RNA Extractor (Trizol) was utilized to construct the final library. Libraries were pooled and sequenced on a 150-bp paired-end Illumina HiSeq™ 2000 run. The sequencing data obtained from Illumina Hiseq™ was filtered to get clean reads using Trimmomatic. The reads themselves and their matching reads which length was less than 35nt were removed. Clean reads were aligned to the reference sequence (Gallus_gallus-5.0, NCBI) using HISAT2. Results: Sampling directly from the liver yielded sufficient quantities of RNA to assess transcripts from each chicken and mapped to 24,883 Gallus gallus genes. Conclusions: We used the method of RNA-seq to find the target genes and related signaling pathways involved in the co-administered (AFB1 and curcumin) and their underlying mechanisms.

ORGANISM(S): Gallus gallus

PROVIDER: GSE148014 | GEO | 2022/04/02

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2012-12-22 | E-MTAB-3724 | biostudies-arrayexpress
| PRJNA622813 | ENA
2023-05-21 | PXD042376 |
| PRJNA699673 | ENA
2019-06-20 | GSE133000 | GEO
2017-04-21 | GSE98039 | GEO
2015-03-13 | GSE36504 | GEO
2018-08-01 | GSE115383 | GEO
2009-04-16 | GSE12974 | GEO
2010-06-19 | E-GEOD-12974 | biostudies-arrayexpress