Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

ABSTRACT: The goal of this study is to study the chromatin accessibility signature after Satb2 gene loss in the colonic epithelium.

ORGANISM(S): Mus musculus

PROVIDER: GSE148690 | GEO | 2021/10/05

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

scRNA-Seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

Project description:The goal of this study is to study signal cell transcripton level changes after Satb2 gene loss in the colonic epithelium.

2021-10-05 | GSE148693 | GEO

Bulk RNA-seq of Intestine Epithelia (Jejunum, Ileum, Cecum and Colon) from Satb2-deficient and WT mice

Project description:The goal of this study is to study the consequence of Satb2 gene loss in the colonic epithelium.

2021-10-05 | GSE148692 | GEO

Bulk RNA-seq (>20M reads) of Intestine Epithelium (Ileum and Colon) from Satb2-deficient and WT mice

Project description:Resequening ileum and colon epithelium with deeper reads to evaluate consequence of Satb2 gene loss in the colonic epithelium. The same library construction method was used to compare with Bulk RNA-seq data from In Vitro cultured mouse organoids.

2021-10-05 | GSE167284 | GEO

ChIP-seq of Colonic Intestine Epithelium from Satb2-deficient and WT mice

Project description:We use ChIP-seq to understand the genomic binding sites of SATB2 in colonic epithelium and to study the shifting of CDX2 and HNF4A's genomic binding sites after SATB2 loss in colonic epithelium.

2021-10-05 | GSE167287 | GEO

Bulk RNA-seq of Early Time Course Colonic Epithelia from Satb2-deficient and WT mice

Project description:Given that SATB2 is expressed in differentiated colonic cells as well as the stem cells, we evaluated whether SATB2 might directly regulate the identity of the differentiated cells

2021-10-05 | GSE180023 | GEO

Enhancer Analysis (CUT&RUN) of Intestine Epithelium from Satb2-deficient and WT mice

Project description:Understanding the enhancer activity in SATB2 regulates colonic intestine epithelial fate and tissue plasticity.

2021-10-05 | GSE167289 | GEO

scRNA-Seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

Project description:scRNA-Seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

| PRJNA625447 | ENA

ATAC-seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

Project description:ATAC-seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

| PRJNA625438 | ENA

ChIP-seq of Colonic Intestine Epithelium from Satb2-deficient and WT mice

Project description:ChIP-seq of Colonic Intestine Epithelium from Satb2-deficient and WT mice