Transcriptomics

Dataset Information

0

Impact of maturation and growth temperature on transcription profiles of Penicillium roqueforti conidia


ABSTRACT: Purpose: The goal of this study is to compare differences between Penicillium roqueforti conidia from various conditions shown to affect heat-resistance to identify genes possibly related to heat-resistance using RNA-seq. Methods: mRNA from Penicillium roqueforti conidia produced at different temperatures (15C, 25C or 30C) and different cultivation times (3, 5, 7 or 10 days) was extracted, in triplicate, and sequenced with Illumina NextSeq500. The sequence reads that passed quality filters were analyzed using Hisat2 followed by Cufflinks. Results: we mapped about 19 million sequence reads per sample to the Penicillium roqueforti genome (build LCP96 04111) and identified 9723 transcripts in the conidia. Data analysis revealed a subset of 33 genes showing increased expression in culture conditions that increase heat-resistance. Conclusions: Our study generated insight into multiple genes that are likely involved in the heat-resistance of Penicillium roqueforti.

ORGANISM(S): Penicillium roqueforti

PROVIDER: GSE149235 | GEO | 2020/04/24

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2022-03-17 | GSE168992 | GEO
2022-07-31 | GSE209987 | GEO
2017-09-15 | GSE101412 | GEO
2020-01-24 | PXD017067 | Pride
2004-01-18 | GSE946 | GEO
2022-03-29 | GSE191240 | GEO
| PRJNA627715 | ENA
2020-04-20 | GSE145355 | GEO
2013-11-21 | GSE51109 | GEO
2021-05-29 | GSE175771 | GEO