Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression analyses of four Pisolithus microcarpu strains: Si9, MW3, R4 and R10. Gene expression in Eucalyptus grandis mycorrhizal root tip was compared to gene expression in free-living mycelium for each strain.

ABSTRACT: Illumina HiSeq technology was used to generate mRNA profiles from Pisolithus microcarpus Si9, MW3, R4 or R10 ectomycorrhizal root tips compared to their respective free-living mycelium.

ORGANISM(S): Eucalyptus grandis Pisolithus microcarpus

PROVIDER: GSE155420 | GEO | 2020/11/18

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Poplar-Laccaria: A Timecourse of Mycorrhizal Root Tip Development

2014-10-09 | GSE62172 | GEO

Gene expression analyses of four Pisolithus microcarpu strains: Si9, MW3, R4 and R10. Gene expression in Eucalyptus grandis mycorrhizal root tip was compared to gene expression in free-living mycelium for each strain.

Project description:Gene expression analyses of four Pisolithus microcarpu strains: Si9, MW3, R4 and R10. Gene expression in Eucalyptus grandis mycorrhizal root tip was compared to gene expression in free-living mycelium for each strain.

| PRJNA649705 | ENA

Poplar-Laccaria: A Timecourse of Mycorrhizal Root Tip Development

Project description:This study characterizes the transcriptomic alterations of P. trichocarpa during interaction with the ectomycorrhizal fungus Laccaria bicolor S238N. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation. We performed 32 hybridizations (NimbleGen) with samples derived from Populus trichocarpa control roots and P.trichocarpa mycorrhizal root tips. Samples were taken after 2,4,6 and 12 weeks of interaction (four biological replicates). All samples were labeled with Cy3.

2014-10-09 | E-GEOD-62172 | biostudies-arrayexpress

RNA-Seq of Arabidopsis thaliana growth promotion by Priestie megaterium YCR-R4

Project description:Plant growth promoting test in A. thaliana by using biostimulant strain P. megaterium YC4-R4 in liquid inoculant A. thaliana mRNA profiles of 13-day old wild type (WT) mock and WT treated (inoculated with P. megaterium YC4-R4)

2022-03-30 | GSE199501 | GEO

Eucalyptus grandis BC progeny

Project description:The gene expression profiles of the differentiating xylem of 91 Eucalyptus grandis backcross individuals were characterized following a loop design (Churchill, G.A. Nat Genet. 2002 Dec;32 Suppl:490-5). In this design, RNA from genotype 1666 (labeled with Cy5) was hybridized with RNA from genotype 1667 (labeled with Cy3) on the first slide(GEO accession number GSM7637); the same genotype 1667 (now labeled with Cy5) was compared with genotype 1669 (Cy3) on the second slide (GSM7638), and so on. The loop was completed when genotype 1666 (Cy3) was contrasted to individual 1796 (Cy3) on slide GSM7727. Therefore, 91 individuals (genotypes) from the E. grandis backcross population were analyzed in two replicates, one with RNA labeled with Cy3 and the other with Cy5. Keywords = Eucalyptus, xylem, microarray Keywords: ordered

2003-07-16 | GSE502 | GEO

Elevated carbon dioxide alters the interaction between Eucalyptus grandis and Pisolithus microcarpus through a complex shift in the root transcriptome

Project description:Illumina HiSeq technology was used to generate mRNA profiles from in vitro Eucalyptus grandis roots interacting with two different Pisolithus microcarpus strains (SI-9 and SI-12) and under two different CO2 concentrations (400 and 650 ppm) . Control roots or ectomycorrhizal root tips were harvested after 1 month and used for RNA extraction. Paired-end (2X150bp) reads were generated and aligned to Eucalyptus grandis transcripts (http://www.phytozome.net/; primarytranscripts only) using CLC Genomics Workbench 6.

2014-10-10 | GSE62227 | GEO

Haladaptatus sp. R4 strain:R4

Project description:Haladaptatus sp. R4 strain:R4 Genome sequencing and assembly

| PRJNA316929 | ENA

Gene expression changes in Cenococcum geophilum 1.58-Pinus sylvestris ectomycorrhizal roots, sclerotia and extramatrical mycelium compared to Cenococcum geophilum free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal Pine roots, sclerotia and extramatrical mycelium compared to free-living mycelium . Ectomycorrhizal pine roots, sclerotia, extramatrical mycelium and control mycelium were harvested after 90 days and used for RNA extraction. Reads of 150bp were generated and aligned to the C. geophilum reference genome (https://genome.jgi.doe.gov/Cenge3/Cenge3.home.html).

2018-03-01 | GSE108866 | GEO

Eucalyptus grandis BC progeny

2010-06-05 | E-GEOD-502 | biostudies-arrayexpress

Poplar-Laccaria Mycorrhizal Roots

Project description:This study characterizes the transcriptomic alterations of P. tremula x P. alba at three weeks after inoculation with the ectomycorrhizal fungus Laccaria bicolor.

2015-06-22 | GSE66237 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data