Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-seq identifies chromatin landscapes linked to the regulation of oxidative stress in the human fungal pathogen Candida albicans

ABSTRACT: ATAC-seq analysis of Candida albicans SC5314 treated or not treated with hydrogen peroxide to assess the accessible chromatin landscape upon oxidative stress in comparison to normal growth in YPD at 30 °C.

ORGANISM(S): Candida albicans

PROVIDER: GSE156582 | GEO | 2020/09/27

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Effect of fludioxonil treatment on candida albicans SC5314

Project description:Comparison of Candida albicans SC5314 treated with fludioxonil for 30 min and untreated controls under hyphae-inducing conditions

2012-10-01 | GSE39715 | GEO

Whole genome sequencing of ketoconazole adaptors in Candida albicans

Project description:Candida albicans lab strain SC5314 was spread on YPD plates supplemented with ketoconazole (0.125-16μg/ml); Randomly 3 adaptors from each plate were sequenced.

2023-06-15 | E-MTAB-12803 | biostudies-arrayexpress

Whole genome sequencing of fluconazle resistant and tolerant adaptors in Candida albicans

Project description:Candida albicans lab strain SC5314 was daily passaged in YPD broth supplemented with fluconazole. Some fluconazole-resistant and some fluconazole-tolerant adaptors were sequenced.

2022-10-10 | E-MTAB-12189 | biostudies-arrayexpress

Transcriptomes of C. albicans aox2 deletion mutant or wild-type C. albicans SC5314 treated with pyocyanin

Project description:We compared the early gene expression profiles (30 min) of log-phase wild type C. albicans SC5314 growing in YPD at 30 °C to an aox2 deletion mutant or to wild-type SC5314 in response to 80 micromolar pyocyanin or 0.5 mM SHAM

2019-07-26 | GSE117717 | GEO

Whole genome sequencing of fluconazole tolerant adaptors derived from exposure to echinocandins in Candida albicans

Project description:Candida albicans lab strain SC5314 was spread on YPD plates supplemented with echinocandins (caspofungin, anidulafungin, micafungin, rezafungin). The adaptors were tested for tolrance to fluconazole. Randomly 43 tolerant adaptors, as well as the parent SC5314, were sequenced.

2023-07-11 | E-MTAB-12449 | biostudies-arrayexpress

Whole genome sequencing of Chr3x3 derived brefeldin A adpators in Candida albicans

Project description:In Candida albicans, SC5314 is the wild type strain. FY1398 is Chr3 trisomy strain derived from SC5314. In this study, approximately 1 million cells of FY1398 were spread on YPD plate supplemented with 128 ug/ml brefeldin A. Randomly 18 adpators (LH40-LH57) were chosen. These adaptors were sequenced.

2023-09-07 | E-MTAB-12510 | biostudies-arrayexpress

Comparison of Candida albicans lab strain SC5314 grown at different temperatures

Project description:Candida albicans lab strain SC5314 was grown in YPD broth at 30C and 37C from OD600=0.1 till 1.0. Cells were harvested and flash frozen in liquid nitrogen. Then the transcriptome was compared.

2022-07-18 | E-MTAB-11924 | biostudies-arrayexpress

Expt 6---Comprative transcriptomics of euploid and aneuploid Candida albicans strains

Project description:Candida albicans lab strain SC5314, which is a euploid diploid, was used to generate aneuploid fluconazole adaptors. Transcriptomes of aneuploids were compared to the euploid parent by growing cells in rich YPD broth.

2022-09-26 | E-MTAB-12185 | biostudies-arrayexpress

Whole genome sequencing of papillary colonies on YPD plate supplemented with tebuconazole in Candida albicans

Project description:Candida albicans lab strain SC5314 was spotted on YPD plates supplemented with 0.25-16 μg/ml tebuconazole. Randomly at least 4 papillary colonies from each plate were sequenced.

2023-08-31 | E-MTAB-13245 | biostudies-arrayexpress

Next generation sequencing facilitates quantitative analysis of transcriptional profiling of Candida albicans SC5314 with H55 treatment or not.

Project description:mRNA profiles of Candida albicans SC5314 treated with compound H55 and untreated Candida albicans SC5314 were generated by deep sequencing, in triplicate, using Illumina HiSeq X Ten. The sequence reads that passed quality filters were analyzed at the transcript isoform level. qRT–PCR validation was performed using SYBR Green assay. We find that some genes in ergosterol biosynthesis pathaway such as ERG3, ERG6 and ERG9 were upregulated, but HMG1, ERG2 and ERG12 were downregulated. Genes invovled in hyphal growth and adhesion were also accordingly regulated in H55 treated group.

2023-05-18 | GSE209608 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data