Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis

ABSTRACT: RNA-seq was performed to detect transcripts level of WT and mutants.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE157196 | GEO | 2020/11/08

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

RNA-seq analysis of WT, jmj28-3 in Arabidopsis

Project description:RNA-seq was performed to detect transcripts level of WT and mutants

2024-03-12 | GSE168891 | GEO

RNA-seq analysis of Col-0 and jmj28-2 in Arabidopsis

Project description:RNA-seq was performed to detect transcripts level of WT and mutants

2023-02-22 | GSE188140 | GEO

RNA-seq of Arabidopsis thalianal Col-0 wild type and clf-29 lhp1-4 mutant root

Project description:RNA-seq was performed in order to identify qualitative variation of transcripts in clf-29 lhp1-4 compared to WT, including SNPS, indels, splicing fidelity

2022-09-19 | E-MTAB-11263 | biostudies-arrayexpress

Gene expression in clf and lhp1

Project description:Transcriptome changes in leaves of PcG protein mutants clf and lhp1. Fully expanded rosette leaf 6 was collected from 10 35-d-old plants grown in short day photoperiods.

2013-08-22 | E-MTAB-1412 | biostudies-arrayexpress

Genome-wide expression changes of Arabidopsis Polycomb-group mutant clf-29 lhp1-4 under low nitrate provision

Project description:We analyzed here the genome-wide expression changes in roots of clf-29 lhp1-4 mutants in comparison to the WT reference. Plants were grown hydroponically under low nitrate provision (0.3 mM KNO3) and short-days conditions and roots were collected after 5 weeks of growth.

2022-09-01 | E-MTAB-9792 | biostudies-arrayexpress

RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis

Project description:RNA-seq analysis of WT, aipp3, aipp2, paipp2, aipp2/paipp2, cpl2, lhp1, and clf in Arabidopsis

| PRJNA660429 | ENA

LHP1, CLF binding sites and their role in H3K27me3 spreading in Arabidopsis thaliana

Project description:LHP1 regulates H3K27me3 spreading

2016-05-02 | GSE76571 | GEO

Arabidopsis MSI1 connects LHP1 to PRC2 complexes.

Project description:Polycomb group (PcG) proteins form essential epigenetic memory systems for controlling gene expression during development in plants and animals. However, the mechanism of plant PcG protein functions remains poorly understood. Here, we probed the composition and function of plant Polycomb repressive complex 2 (PRC2). This work established the fact that all known plant PRC2 complexes contain MSI1, a homologue of Drosophila p55. While p55 is not essential for the in vitro enzymatic activity of PRC2, plant MSI1 was required for the functions of the EMBRYONIC FLOWER and the VERNALIZATION PRC2 complexes including trimethylation of histone H3 Lys27 (H3K27) at the target chromatin, as well as gene repression and establishment of competence to flower. We found that MSI1 serves to link PRC2 to LIKE HETEROCHROMATIN PROTEIN 1 (LHP1), a protein that binds H3K27me3 in vitro and in vivo and is required for a functional plant PcG system. The LHP1-MSI1 interaction forms a positive feedback loop to recruit PRC2 to chromatin that carries H3K27me3. Consequently, this can provide a mechanism for the faithful inheritance of local epigenetic information through replication.

| S-EPMC3715863 | biostudies-literature

RNA-seq analysis of WT, swo1-2 with or without salt treatment in Arabidopsis

Project description:RNA-seq was performed to detect differentially expressed genes between WT and swo1 mutant under salt stress

2023-09-15 | GSE176433 | GEO

Genome-wide small RNA abundance measured by small RNA-sequencing of Arabidopsis WT and Polycomb-group mutant clf-29 lhp1-4 under low nitrate provision

Project description:We analyzed here the genome-wide small RNAs expression changes in roots of WT and clf-29 lhp1-4 mutant. Plants were grown hydroponically under low nitrate provision (0.3 mM KNO3) and short-days conditions, and roots were collected after 5 weeks of growth.

2022-09-01 | E-MTAB-9793 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data