Transcriptomics

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Elevated HIV trans-infection of CD4 T cells in MRKAd5 vaccine recipients due to CD8 T cells targeting of adapted epitopes


ABSTRACT: We report the application of single-cell-based RNA sequencing technology for high-throughput profiling of antigen specific CD8 T cells induced by MRKAd5 vaccine (HVTN502 trial). Based on the transcriptomic data, we identified 68 differentially expressed genes comparing adapted versus non-adapted epitope specific CD8 T cells. Interestingly, CLOCK and HNF1B, which are critical for circadian rhythm, were found to be upregulated in both recipients with the non-adapted epitope specific CD8 T cell responses.

ORGANISM(S): Homo sapiens

PROVIDER: GSE163669 | GEO | 2021/05/21

REPOSITORIES: GEO

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