Transcriptomics

Dataset Information

0

Investigating Immune and Non-Immune Cell Interactions in Head and Neck Tumors by Single-Cell RNA Sequencing


ABSTRACT: Head and neck squamous cell carcinoma (HNSCC) is characterized by complex relations between stromal, epithelial, and immune cells within the tumor microenvironment (TME). To enable the development of more efficacious therapies, we aim to study the heterogeneity, signatures of unique cell populations, and cell-cell interactions of suppressive non-immune and immune cell populations in 6 human papillomavirus (HPV)+ and 12 HPV- HNSCC patient tumor and matched peripheral blood specimens using single-cell RNA sequencing (scRNAseq). Using this dataset of 134,606 cells, we show cell type-specific signatures associated with inflammation and HPV status, describe the negative prognostic value of fibroblasts with elastic differentiation specifically in the HPV+ TME, predict therapeutically targetable checkpoint receptor-ligand interactions, and show that tumor-associated macrophages are dominant contributors of PD-L1 and other immune checkpoint ligands in the TME. We present a comprehensive single-cell view of cell-intrinsic mechanisms and cell-cell communication shaping the HNSCC microenvironment.

ORGANISM(S): Homo sapiens

PROVIDER: GSE164690 | GEO | 2021/11/08

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2019-11-13 | GSE139324 | GEO
2022-06-01 | PXD030343 | Pride
2022-07-06 | GSE182002 | GEO
2022-07-06 | GSE182026 | GEO
2024-11-20 | GSE281978 | GEO
| phs001824 | dbGaP
2021-06-01 | GSE135400 | GEO
2021-06-01 | GSE135344 | GEO
2024-01-01 | E-MTAB-12922 | biostudies-arrayexpress
2024-07-09 | GSE271371 | GEO