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Using pooled earthworm RNA to test 244K probes on TA-3 test array design 2520024 sense 2

ABSTRACT: To validate the 244K 60-mer or 40-mer probes using a custom-designed Agilent oligo array and assuming sense orientation of all target sequences.

ORGANISM(S): Eisenia fetida

PROVIDER: GSE16549 | GEO | 2009/06/12

SECONDARY ACCESSION(S): PRJNA122779

REPOSITORIES: GEO

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Using pooled earthworm RNA to test 244K probes on TA-1 test array design 2520022 sense 1

Project description:To validate the 244K 60-mer probes using a custom-designed Agilent oligo array and assuming sense orientation of all target sequences.

2009-06-12 | GSE16536 | GEO

Using pooled earthworm RNA to test 244K probes on TA-4 test array design 2520025 antisense 2

Project description:To validate the 244K 60-mer or 40-mer probes using a custom-designed Agilent oligo array and assuming antisense orientation of all target sequences.

2009-06-12 | GSE16550 | GEO

Using pooled earthworm RNA to test 244K probes on TA-2 test array design 2520023 antisense 1

Project description:To validate the 244K 60-mer probes using a custom-designed Agilent oligo array and assuming antisense orientation of all target sequences.

2009-06-12 | GSE16548 | GEO

Using pooled earthworm RNA to test 244K probes on TA-3 test array design 2520024 sense 2

Project description:To validate the 244K 60-mer or 40-mer probes using a custom-designed Agilent oligo array and assuming sense orientation of all target sequences. A total of four test arrays were designed assuming both sense and antisense orientations. A sole pooled RNA was used for testing all 4 designs. Two arrays were hybridized for each design. This series contains test results for design 2520024.

2010-05-18 | E-GEOD-16549 | biostudies-arrayexpress

Using pooled earthworm RNA to test 244K probes on TA-1 test array design 2520022 sense 1

Project description:To validate the 244K 60-mer probes using a custom-designed Agilent oligo array and assuming sense orientation of all target sequences. A total of four test arrays were designed assuming both sense and antisense orientations. A sole pooled RNA was used for testing all 4 designs. Two arrays were hybridized for each design. This series contains test results for design 2520022.

2010-05-18 | E-GEOD-16536 | biostudies-arrayexpress

Using pooled earthworm RNA to test 244K probes on TA-4 test array design 2520025 antisense 2

Project description:To validate the 244K 60-mer or 40-mer probes using a custom-designed Agilent oligo array and assuming antisense orientation of all target sequences. A total of four test arrays were designed assuming both sense and antisense orientations. A sole pooled RNA was used for testing all 4 designs. Two arrays were hybridized for each design. This series contains test results for design 2520025.

2010-05-18 | E-GEOD-16550 | biostudies-arrayexpress

Using pooled earthworm RNA to test 244K probes on TA-2 test array design 2520023 antisense 1

Project description:To validate the 244K 60-mer probes using a custom-designed Agilent oligo array and assuming antisense orientation of all target sequences. A total of four test arrays were designed assuming both sense and antisense orientations. A sole pooled RNA was used for testing all 4 designs. Two arrays were hybridized for each design. This series contains test results for design 2520023.

2010-05-18 | E-GEOD-16548 | biostudies-arrayexpress

Using pooled earthworm RNA to test 244K probes on TA-1, TA-2, TA-3, TA-4 test arrays

Project description:This SuperSeries is composed of the following subset Series: GSE16536: Using pooled earthworm RNA to test 244K probes on TA-1 test array design 2520022 sense 1 GSE16548: Using pooled earthworm RNA to test 244K probes on TA-2 test array design 2520023 antisense 1 GSE16549: Using pooled earthworm RNA to test 244K probes on TA-3 test array design 2520024 sense 2 GSE16550: Using pooled earthworm RNA to test 244K probes on TA-4 test array design 2520025 antisense 2 Refer to individual Series

2010-05-18 | E-GEOD-16551 | biostudies-arrayexpress

Using pooled earthworm RNA to test 244K probes on TA-1, TA-2, TA-3, TA-4 test arrays

Project description:This SuperSeries is composed of the SubSeries listed below.

2009-06-12 | GSE16551 | GEO

Agilent 244K aCGH data for 10 human gastric cancers

Project description:Copy number alteration (CNA) is a good signpost to identify cancer related genes. CNAs were analyzed using the Agilent 244K array comparative genomic hybridization (aCGH) in fresh-frozen tumor and matched normal tissues from 10 gastric cancer patients.

2015-05-29 | GSE69318 | GEO

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