Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome analysis of the extremotolerant Ramazzottius varieornatus exposed to 60Co gamma ray

ABSTRACT: Transcriptome sequencing of Ramazzottius varieornatus exposed to 500Gy gamma ray.

ORGANISM(S): Ramazzottius varieornatus

PROVIDER: GSE166661 | GEO | 2021/04/21

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome analysis of the extremotolerant Ramazzottius varieornatus exposed to 60Co gamma ray

Project description:Transcriptome analysis of the extremotolerant Ramazzottius varieornatus exposed to 60Co gamma ray

| PRJNA701555 | ENA

Time-course RNA-Seq analysis of UVC exposed Ramazzottius varieornatus.

Project description:Time-course RNA-Seq analysis of Ramazzottius varieornatus exposed to UVC for up to 72 hours

2022-03-25 | GSE152753 | GEO

Ramazzottius varieornatus

Project description:Ramazzottius varieornatus overview

| PRJNA330877 | ENA

Ramazzottius varieornatus

Project description:Ramazzottius varieornatus genome

| PRJDB4588 | ENA

Time-course RNA-Seq analysis of UVC exposed Ramazzottius varieornatus.

Project description:Time-course RNA-Seq analysis of UVC exposed Ramazzottius varieornatus.

| PRJNA640345 | ENA

RNA-Seq analysis of juvenile stages of Ramazzottius varieornatus

Project description:Tardigrades are microscopic organisms, famous for their tolerance against extreme environments. The establishment of rearing systems of multiple species has allowed for comparison of tardigrade physiology, in particular in embryogenesis. Interestingly, in-lab cultures of limnic species showed smaller variation in hatching timing than terrestrial species, suggesting a hatching regulation mechanism acquired by adaptation to their habitat. To this end, we screened for coordinated gene expression during the development of two species of tardigrades, Hypsibius exemplaris and Ramazzottius varieornatus, and observed induction of the arthropod molting pathway. Exposure of ecdysteroids and juvenile hormone analog affected egg hatching but not embryonic development in only the limnic H. exemplaris. These observations suggest a hatching regulation mechanism by the molting pathway in H. exemplaris.

2019-10-31 | GSE130111 | GEO

RNA-Seq analysis of developmental, juvenile, and anhydrobiotic stages of Hypsibius dujardini and Ramazzottius varieornatus

Project description:Limno-terrestrial tardigrades enter a state called anhydrobiosis when exposed to desiccation, and acquire tolerance against various extreme environments. The anhydrobiotic tardigrade Hypsibius dujardini, is a non-pigmented tardigrade easy to culture and RNAi method have been established, therefore making it a model tardigrade for tardigrade molecular research. Previous genome assemblies of this tardigrade had increased size due to heterozygosity. Here, we have sequenced the genome of H. dujardini using single individual Illumina DNA-Seq data and PacBio long read data, and employed a heterozygosity aware assembly method to assemble a near-complete high quality genome. In order to annotate the genome with gene predictions, we conducted RNA-Sequencing of various stages of developmental, juvenile, adult, and anhydrobiotic stage H. dujardini and Ramazzottius varieornatus, a tardigrade capable of rapid anhydrobiosis entry, and used these data for gene prediction with BRAKER v1.9 or differential gene expression analysis of the active and anhydrobiotic stages.

2017-02-28 | GSE94295 | GEO

RNA-Seq analysis of juvenile stages of Ramazzottius varieornatus

Project description:RNA-Seq analysis of juvenile stages of Ramazzottius varieornatus

| PRJNA533981 | ENA

Osmotic stress tolerance and transcriptomic response of Ramazzottius varieornatus following osmotic tun formation.

Project description:This project corresponds to RNA sequencing data from Ramazzottius varieornatus exposed to osmotic stress.

| PRJEB59868 | ENA

Radiation-Induced T Cell Lymphoma: Carbon ion- vs. Gamma Ray-Induced

Project description:Here, male and female B6C3F1 mice were given single or fractionated whole-body exposure(s) to a monoenergetic carbon ion radiotherapy beam at the Heavy Ion Medical Accelerator in Chiba, Japan, matching the radiation quality delivered to the normal tissue ahead of the tumour volume. These mice were then monitored for the remainder of their lifespan and a large number of T cell lymphomas were analysed, alongside those arising in mice exposed to equivalent doses of standard Cs137 gamma ray-irradiation. Using genome-wide DNA copy number analysis to identify genomic loci involved in radiation-induced lymphomagenesis and subsequent detailed analysis of Notch1, Ikaros, Pten, Trp53 and Bcl11b genes we compared the genetic profile of the carbon ion- and gamma ray-induced tumours. The canonical set of genes previously associated with radiation-induced T cell lymphoma was identified in both radiation groups. While the pattern of disruption of the various pathways was somewhat different between the radiation types, most notably Pten mutation frequency and loss of heterozygosity flanking Bcl11b, the most striking finding was the observation of large interstitial deletions at various sites across the genome in carbon ion-induced tumours, which were only seen infrequently in the gamma ray-induced tumours analysed. 32 unique tumours (12 gamma ray-induced, 20 carbon ion-induced) each with sex-matched reference DNA

2015-03-03 | E-GEOD-61315 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data