Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA sequencing of Arabidopsis seed developmental stages at different degrees of heat stress

ABSTRACT: We analyzed transcriptome changes in Arabidopsis between seed development (3 stages corresponding Heart (H), Bent (B) and mature (MS) embryo stages) at three growing conditions (23, 25 and 27°C)

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE167129 | GEO | 2021/03/23

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Bisulfite sequencing (WGBS) of Arabidopsis seed developmental stages at different degrees of heat stress

Project description:We analyzed methylome changes in Arabidopsis between seed development (2 stages corresponding to Bent (B) and mature (MS) embryo stages) at three growing conditions (23, 25 and 27°C)

2021-03-23 | GSE167243 | GEO

RNA sequencing of Arabidopsis seed developmental stages at different degrees of heat stress

Project description:RNA sequencing of Arabidopsis seed developmental stages at different degrees of heat stress

| PRJNA703036 | ENA

Bisulfite sequencing (WGBS) of Arabidopsis seed developmental stages at different degrees of heat stress

Project description:Bisulfite sequencing (WGBS) of Arabidopsis seed developmental stages at different degrees of heat stress

| PRJNA703984 | ENA

RNA-seqencing of Jojoba seed tissues, seed developmental stages, and other tissues

Project description:RNA-seqencing of Jojoba seed tissues, seed developmental stages, and other tissues

| PRJNA540751 | ENA

Whole-genome bisulfite sequencing (WGBS) of Medicago truncatula developmental and mature embryos at four seed developmental stages produced at optimal (20°C) or heat stress conditions (26°C).

Project description:We analysed the methylated cytocines in gDNA sequence of Medicago (A17) embryos during seed maturation concerning Heat Stress. Embryos were harvested at four developemental stages (called S1 to S4): 17, 26, 36 and 44 days after polination (DAP) at 20°C and 14, 17, 22 and 28 days after polination (DAP) at 26°C.

2022-04-30 | GSE201335 | GEO

Developmental transcriptome of Castanospermum australe seed tissues

Project description:Seeds of the legume Castanospermum australe are shed at relatively high moisture contents, and to do not acquire desiccation tolerance during their seed development, they are referred to as 'recalcitrant'. To characterize the regulatory pathways and molecular mechnanisms are occur during seed development and to allow for a comparative analysis with seed development of desiccation-tolerant species, cotyledon and embryonic axes were harvested at different stages of development, arbitrarily defined in terms of seed weight (grams) and color. Transcriptomes of 6 stages were analysed using Nimblegen slides: 2.5g - 4.5g - 7.5g - yellow-green (YG) - green (G) - brown (B) for cotyledons (C) and YG, G and B for emrbyonic axes (A)

2018-01-17 | GSE109217 | GEO

Quantitative proteomic analyses reveal the dynamics of protein and amino acid accumulation in soybean seed from early to late stages of seed filling

Project description:Global analyses of protein profiling during seed development in soybean is paramount to understand the metabolic processes that correspond to the differential protein accumulation and hence seed quality in soybean. Using high throughput tandem mass tag (TMT) based tagging techniques, we identified 4,172 proteins in three stages namely early, mid, and late seed filling. We mapped the identified metabolic pathways associated with seed filling. An elevated level of several kinases was observed from the early to mid-stages of seed filling, indicating that protein phosphorylation was a major event that occurred during this period. The early to late stages of seed filling was characterized by an increased level of proteins associated with the cell wall, oil, and vacuolar-related processes. Twenty-five seed storage protein genes located on 12 different chromosomes were identified. Among the seed storage proteins, 7S (B-subunit) and 11S (Gy3, Gy4, Gy5) exhibited steadily increased abundance from early to late-stage seed development, whereas, 2S albumin exhibited decreased abundance during the same period. An increased abundance of proteases, senescence-associated proteins and, oil synthesis proteins was observed from the mid to late stages of seed filling. The mid to late stages of seed filling were also characterized by a lower abundance of transferases, transporters, Kunitz family trypsin, and protease inhibitors. Two enzymes associated with methionine synthesis exhibited lower abundance from early to late stages. This study unveiled the expression of several key enzymes/proteins associated with amino acid and protein syntheses and their accumulation during seed development which will assist scientists and breeders to develop new value-added soybeans with improved protein quality.

2021-06-06 | MSV000087577 | MassIVE

RNA sequencing of Medicago seed tissues under optimal and heat stress conditions

Project description:We analysed transcriptome changes between seed devlopement (4 stages corresponding at before (S1) and after (S2) desiccation tolerance acquisition and before (S3) and after (S4) longevity acquisition) in dissected seed tissues (embryo, E; Endosperm Eo and Seed Coat SC)

2020-11-03 | GSE160725 | GEO

mRNA profiling of soybean seed regions and tissues at five developmental stages

Project description:mRNA profiling of soybean seed regions and tissues at five developmental stages

| PRJNA476869 | ENA

Transcriptomic analysis of water- versus Xcf-inoculated common bean seeds at three developmental stages

Project description:transcriptome approach was performed at three stages of seed development during seed filling, seed maturation and seed maturity to compare between seed transcriptomes from Xcf-inoculated and water-inoculated seeds.

2024-09-03 | GSE226918 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data