Transcriptomics

Dataset Information

0

Regulatory response of methanogen cells to different forms of iron and sulfur


ABSTRACT: We used comparative transcriptomics to explore cellular responses to growth on pyrite (FeS2) or aqueous iron (Fe(II)) and sulfur (cysteine or sulfide). Transcriptomic data from wild type M. barkeri identified subset of genes that was significantly upregulated during grown on FeS2 versus ferrous iron and cysteine or sulfide. Several of these genes, including a membrane-bound hydrolase, alpha-keto reductases, and flavin mononucleotide-dependent flavodoxin reductases were highly conserved among known FeS2-reducing methanogens and were located in a single gene cassette. Putative enzymatically catalyzed mechanisms of FeS2 reduction are proposed for each of these enzyme systems to guide their future biochemical and biophysical study. Transcriptomic data from wild type M. barkeri identified subset of genes that was significantly upregulated during grown on FeS2 versus ferrous iron and cysteine or sulfide. Several of these genes, including a membrane-bound hydrolase, alpha-keto reductases, and flavin mononucleotide-dependent flavodoxin reductases were highly conserved among known FeS2-reducing methanogens and were located in a single gene cassette. Putative enzymatically catalyzed mechanisms of FeS2 reduction are proposed for each of these enzyme systems to guide their future biochemical and biophysical study.

ORGANISM(S): Methanosarcina barkeri

PROVIDER: GSE168895 | GEO | 2022/03/13

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2021-07-07 | PXD024933 | Pride
2023-05-01 | GSE216895 | GEO
2021-11-03 | PXD028910 | Pride
2021-11-02 | PXD025924 | Pride
2020-07-04 | GSE153766 | GEO
2012-05-14 | E-GEOD-36299 | biostudies-arrayexpress
2018-04-07 | E-MTAB-6633 | biostudies-arrayexpress
2023-05-24 | MSV000092027 | MassIVE
2012-05-15 | GSE36299 | GEO
2008-05-02 | E-GEOD-11296 | biostudies-arrayexpress