Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dynamic network biomarker analysis discovers IbNAC083 in initiation and regulation of sweet potato root tuberization

ABSTRACT: The formation and development of storage roots is an intricate process regulated via a complex transcriptional regulatory network. To significantly advance our understanding of the molecular mechanisms governing storage root initiation and development in sweet potato, we performed a comprehensive analysis of transcriptome dynamics during root development.

ORGANISM(S): Ipomoea batatas

PROVIDER: GSE172378 | GEO | 2021/10/31

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Analysis of global gene expression signatures in sweet potato as affected by temperature stress

Project description:Global gene expression signatures was analysed through microarray expression profiling as a discovery platform to identify up and down regulated ESTs that represent genes involved in metabolic pathways in the leaf, fibrous root and storage root (tuber forming root) of sweetpotato (Ipomoea batatas) as affcted by high temperature stress (40oC) compared to ambient temperature (30oC). Also Global gene expression signatures was analysed by the same procedure to explore up and down regulated ESTs in tuberous root of sweet potato in comparison with fibrous root of Ipomoea cornea and identify unique ESTs that represent genes involved in tuber formation in sweet potato.

2015-10-01 | GSE51862 | GEO

Transcriptome sequencing identifies tuberous root development related genes in sweet potato

Project description:To screen genes related to the development of sweet potato tuberous roots, the high throughput sequencing of different stages of sweet potato tuberous roots was performed. The fibrous roots (FR; roots at 20 dap), developing tuberous roots (DR; roots at 60 dap) and mature tuberous roots (MR; roots at 120 dap) of Ipomoea batatas (L.) Taizhong 6 and MBP3 overexpressed lines were used for transcriptome analysis. Totally, we identified 5488 differentially expressed genes between different stage tuberous roots of Taizhong6 and 14312 differentially expressed genes between the tuberous roots of Taizhong6 and MBP3 overexpressed lines, by calculating the gene FPKM in each sample and conducting differential gene analysis. This study provides a foundation for the mechanism analysis of sweet potato tuberous root development.

2023-10-12 | GSE245185 | GEO

Gene expression after SPVD infection in resistant and susceptible sweet potato cultivars

Project description:Sweet potato virus disease (SPVD) is one of the most devastating diseases affecting sweetpotato (Ipomoea batatas), an important food crop in developing countries. SPVD develops when sweetpotato plants are dually infected with sweet potato feathery mottle virus (SPFMV) and sweet potato chlorotic stunt virus (SPCSV). In the current study, global gene expression between SPVD affected plants and virus-tested control plants (VT) were compared in the susceptible ‘Beauregard’ and resistant ‘NASPOT 1’ (Nas) sweetpotato cultivars at 5, 9, 13 and 17 days post inoculation (DPI).

2010-01-29 | GSE18869 | GEO

Dynamic network biomarker analysis discovers IbNAC083 in initiation and regulation of sweet potato root tuberization

Project description:Dynamic network biomarker analysis discovers IbNAC083 in initiation and regulation of sweet potato root tuberization

| PRJNA723055 | ENA

Project description:Storage root development of sweet potato

| PRJNA756699 | ENA

sweet potato rhizosphere-soil

Project description:sweet potato rhizosphere-soil Raw sequence reads

| PRJNA1112307 | ENA

sweet potato rhizosphere-soil

Project description:sweet potato rhizosphere-soil Raw sequence reads

| PRJNA1075339 | ENA

sweet potato rhizosphere-soil

Project description:sweet potato rhizosphere-soil Raw sequence reads

| PRJNA1119064 | ENA

Transcriptome sequencing identifies tuberous root development related genes in sweet potato

Project description:Transcriptome sequencing identifies tuberous root development related genes in sweet potato

| PRJNA1027328 | ENA

Gene expression profiling during storage root formation in sweet potato

Project description:A Microarray experiment was carried out in order to establish the genetic processes and control mechanism involved during storage root formation in Sweetpotato. A Sweetpotato cDNA chip was created from five varieties covering all the growth stages between them. mRNA from primordial root, fibrous root, pencil root and thick storage root was extracted from four varieties of Sweetpotato. The expression profiles were compared between the root growth stages. Keywords: Transcription profiling

2008-12-23 | GSE13809 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data