Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ATAC-seq profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

ABSTRACT: Data reveal epigenome-wide trends associated with progression from the GMP-like state to the neutrophil-like state

ORGANISM(S): Mus musculus

PROVIDER: GSE178863 | GEO | 2021/12/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Reduced representation bisulfite sequencing (RRBS) profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

Project description:Data reveal epigenome-wide trends associated with progression from the GMP-like state to the neutrophil-like state

2021-12-01 | GSE183536 | GEO

ATAC-seq profiling of ER-Hoxa9-Lys-GFP cells before and after inducing irreversible commitment to myeloid differentiation

Project description:Data reveal epigenome-wide trends associated with irreversible commitment from the GMP-like state to the neutrophil-like state

2021-12-01 | GSE178392 | GEO

RNA-seq profiling of ER-Hoxa9-Lys-GFP cells before and after inducing irreversible commitment to myeloid differentiation

Project description:Data reveal transcriptome-wide gene expression trends associated with irreversible commitment from the GMP-like state to the neutrophil-like state

2021-12-01 | GSE178866 | GEO

ChIP-seq profiling of H3K4me3, H3K27ac, H3K27me3, V5-HOXA9-AM, and V5-ER-HOXA9-AM cells before and after inducing irreversible commitment to myeloid differentiation

Project description:Data reveal epigenome-wide trends in histone modifications and Hoxa9 binding sites associated with irreversible commitment from the GMP-like state to the neutrophil-like state

2021-12-01 | GSE178433 | GEO

ATAC-seq profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

Project description:ATAC-seq profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

| PRJNA741255 | ENA

Reduced representation bisulfite sequencing (RRBS) profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

Project description:Reduced representation bisulfite sequencing (RRBS) profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program

| PRJNA761198 | ENA

Gene expression analysis of predestined heterogeneity in neutrophil progenitor clones (ER-HoxB8 conditionally immortalized)

Project description:Transcriptional profiling of clonal neutrophil progenitor populations. Conditionally immortalized CD45.1 naive paired granulocyte-monocyte progenitors (GMPs) and their mature neutrophil counterpart were profiled in an in vitro cell system. Clones demonstrated an overall similar transcriptional profile within the GMP or neutrophil states, however, individual clones had several differentially expressed genes (DEGs) between each other at both the progenitor and mature cell stages.

2022-09-27 | GSE188679 | GEO

Epigenetic analysis of predestined heterogeneity in neutrophil progenitor clones (ER-HoxB8 conditionally immortalized)

Project description:Examination of open chromatin regions between clonal neutrophil progenitor populations. Conditionally immortalized CD45.1 naive paired granulocyte-monocyte progenitors (GMPs) and their mature neutrophil counterpart were profiled in an in vitro cell system. We identified 29,966 differentially accessible regions (DARs) between GMPs and neutrophils, from a total of 74,009 consensus peaks of chromatin accessibility. There is some correlation of open chromatin between GMP and mature neutrophil clones.

2022-09-27 | GSE188682 | GEO

GMP-MoPs display mixed gene expression profiles of both neutrophil and monocyte progenitors [RNAseq mouse]

Project description:This analysis was performed to visualize the distinction between GMP-MoPs and other monocyte and neutrophil progenitors. Transcription factors differentially expressed between GMP-MoPs and cMoPs were selected.

2023-03-13 | GSE224102 | GEO

Time course of myeloid differentiation in the Lysozyme-GFP ER-HoxA9 cells following estradiol withdrawal

Project description:Lysozyme-GFP ER-HoxA9 cells were cultured in the presence of estradiol (active ER-HoxA9) or in the absence of estradiol (inactive ER-HoxA9). Samples were taken at 10 time points over a 120 hour time course of myeloid differentiation to examine those gene expression changes that accompany differentiation upon the release of HoxA9 differentiation arrest.

2016-10-01 | GSE84874 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data