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Expression data from A. thaliana WT and gnat2 under control conditions and after 2 h treatment with high light or darkness

ABSTRACT: We used microarrays to detail the response of A. thaliana WT and gnat2 to high light and darkness treatments and identified distinct classes of regulated genes during this process. In wildtype, the expression of 1,808 of 27,826 analysed transcripts was significantly (>2-fold, p<0.05) altered after high light treatment. Of those 1,808 transcripts, 943 were up- and 865 were downregulated. A similar response to high light was observed in gnat2, where 2,083 transcripts (1,126 up and 957 down) were significantly regulated upon high light stress. Similarly, lack of light resulted in an altered expression of 2,042 transcripts. Of those 2,042 transcripts, 979 were up- and 1,063 were downregulated. The gnat2 mutant responded similarly with 2,361 transcripts (1,195 up and 1,166 down) significantly regulated upon darkness. Under control conditions, only 38 transcripts except GNAT2 were differentially regulated between WT and gnat2. Overall the transcriptional responses of the WT and gnat2 to unexpected short-term darkness and high light were similar.

ORGANISM(S): Arabidopsis thaliana

PROVIDER: GSE178938 | GEO | 2024/09/16

REPOSITORIES: GEO

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Project description:Ascorbate (vitamin C) is an important antioxidant in leaves with multiple functions in photosynthesis and its levels are tightly regulated by light quality. The majority of work to date has focussed on regulation of ascorbate levels via biosynthesis. However, the pathway of ascorbate degradation, which is localised in the apoplast may additionally play a significant role. The degradative pathway begins with ascorbate oxidation by the enzyme ascorbate oxidase (AO) and hence we have examined the impact of manipulation of ascorbate oxidase activity on the content of ascorbate and the acclimation of photosynthesis to changing light levels. Leaf ascorbate content was highly light dependent in Nicotiana tobaccum being double in high compared with low light conditions. In contrast ascorbate oxidase activity was not altered by changing light levels. Transgenic tobacco lines with reduced or enhanced AO activity exhibited no morphological phenotype and photosynthesis under high light was similarly impaired irrespective of the measured AO activity. However further investigation between AO activity and leaf acclimation to changing light intensity revealed a suite of metabolic and transcriptome changes indicating a role for the apoplastic ascorbate pool in chloroplast to nucleus communication. In all genotypes, transcripts associated with ascorbate synthesis and recycling were less abundant following transition from high to low light. However transcripts associated with glutathione recycling, light harvesting, reaction centre function and the Calvin cycle were all increased in abundance. Following the transition from high to low light increases in leaf threonate, an ascorbate degradation product, were proportional to AO activity. A number of chloroplast synthesised amino acids were significantly increased both during high light and following transfer back to LL for 12 h. Similarly, several primary carbohydrates and TCA intermediates were significantly enhanced following high light treatment. In addition to light effects, AO activity had a significant impact on ï¢-alanine, aspartate and threonine. Intriguingly, a large number of fatty acids were reduced in antisense AO and wild-type plants immediately after high light stress however the content of these compounds were significantly increased in overexpressing sense lines. We conclude that AO mediated turnover plays an important role in adjusting cellular ascorbate content to photosynthetic need in a fluctuating light environment and that light mediated signals rapidly adjust that the apoplastic ascorbate pool.

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Expression data from A. thaliana WT and gnat2 under control conditions and after 2 h treatment with high light or darkness

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