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RNA sequencing of invasive vulvar squamous cell carcinoma (VSCC)

ABSTRACT: We retrospectively identified cases of invasive vulvar squamous cell carcinoma. Formalin fixed, paraffin embedded tissues samples were retrieved. Sections were confirmed by H&E staining prior to analysis. Sections were processed by ribosomal RNA depletion and RNA-sequencing (KAPA RNA HyperPrep with RiboErase) (HMR). 23 patient samples had RNA of sufficient quality for analysis. HPV status was determined by a consensus of high-risk HPV RNA-ISH and HPV DNA PCR. Only samples that were positive in both assays were considered 'HPV-positive'.

ORGANISM(S): Homo sapiens

PROVIDER: GSE183454 | GEO | 2022/01/01

REPOSITORIES: GEO

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