Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome of 84 garlic accessions

ABSTRACT: A total of 84 diverse germplasms collected from 13 countries were performed for population transcriptomic analysis. Then, Pearson’s correlation analysis was performed between four bulb traits and FPKM values of each gene in 84 accession, thereby to identify genes with an expressed association with bulb traits.

ORGANISM(S): Allium sativum

PROVIDER: GSE186042 | GEO | 2021/10/20

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Transcriptome of 84 garlic accessions

Project description:Transcriptome of 84 garlic accessions

| PRJNA772184 | ENA

Lactarius hengduanensis strain:84

Project description:Lactarius hengduanensis 84 Transcriptome - TR_LHE-84

| PRJNA500017 | ENA

Phage TP-84

Project description:Phage TP-84 Genome sequencing

| PRJNA369340 | ENA

Bradyrhizobium elkanii strain:USDA 84 | isolate:USDA 84

Project description:Bradyrhizobium elkanii USDA 84 genome sequencing

| PRJNA834271 | ENA

CBASS 84

Project description:CBASS 84 Red Sea Stylophora pistillata heat stress response patterns

| PRJNA681108 | ENA

Phenazine regulated genes in Pseudomonas chlororaphis 30-84

Project description:Pseudomonas chlororaphis strain 30-84 is an effective biological control agent against take-all disease of wheat. Phenazines, bacterial secondary metabolites produced by 30-84, are essential for 30-84 to inhibit fungal pathogens, form biofilms, and effectively colonize the rhizosphere. However, how the bacteria themselves respond to phenazines remains unknown. In this study, we conducted an RNA-seq analysis by comparing the wild type strain with a phenazine deficient mutant. RNA-seq analysis identified over 200 genes differentially regulated by phenazines. Consistent with previous findings in Pseudomonas aeruginosa PAO1, phenazines positively contribute to the expression of their own biosynthetic genes. Moreover, phenazine regulatory genes including the phzI/phzR quorum sensing system and the rpeB response regulatory were also expressed at high levels in the presence of phenazines. Besides phenazine biosynthesis and regulatory genes, genes involved in secondary metabolism, exopoysaccharide production and iron uptake as well as amino acid transport were identified as the major components under phenazine control, including many novel genes. We have also demonstrated that mutation of the primary siderophore gene pvdA resulted in up-regulation of phenazine genes when grown in iron-limiting media. These findings implicate phenazines as signaling molecules to regulate gene expression and hence alter metabolism in P. chlororaphis strain 30-84.

2014-11-25 | GSE45247 | GEO

Chlamydia psittaci 84-9462

Project description:Chlamydia psittaci 84-9462 Genome sequencing

| PRJNA77035 | ENA

Metabacillus sp. SLBN-84

Project description:Metabacillus sp. SLBN-84 Genome sequencing

| PRJNA1016927 | ENA

Chlamydia psittaci 84/55

Project description:Chlamydia psittaci 84/55 Genome sequencing

| PRJNA171856 | ENA

Carnobacteriaceae bacterium zg-84

Project description:Carnobacteriaceae bacterium zg-84 Genome sequencing