Transcriptomics

Dataset Information

0

Induction of Rosette-to-Lumen stage embryoids using reprogramming paradigms in ESCs


ABSTRACT: Blastocyst-derived stem cell lines were shown to self-organize into embryo-like structures in 3D cell culture environments. Here, we provide evidence that embryo-like structures can be generated solely based on transcription factor-mediated reprogramming of embryonic stem cells in a simple 3D co-culture system. Embryonic stem cells in these cultures self-organize into elongated, compartmentalized embryo-like structures reflecting aspects of the inner regions of the early post-implantation embryo. Single-cell RNA-seq reveals transcriptional profiles resembling epiblast, primitive-/visceral endoderm, and extraembryonic ectoderm of early murine embryos around E4.5–E5.5. In this stem cell-based embryo model, progression from rosette formation to lumenogenesis accompanied by progression from naïve- to primed pluripotency was observed within Epi-like cells. Additionally, lineage specification of primordial germ cells and distal/anterior visceral endoderm-like cells was observed in epiblast- or visceral endoderm-like compartments, respectively. The system presented in this study allows for fast and reproducible generation of embryo-like structures, providing an additional tool to study aspects of early embryogenesis.

ORGANISM(S): Mus musculus

PROVIDER: GSE188394 | GEO | 2021/11/15

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2023-05-19 | GSE198780 | GEO
2012-05-22 | GSE34799 | GEO
2012-05-21 | E-GEOD-34799 | biostudies-arrayexpress
2011-09-13 | E-GEOD-32094 | biostudies-arrayexpress
2021-04-12 | GSE171209 | GEO
2021-04-12 | GSE171211 | GEO
2021-09-07 | E-MTAB-9645 | biostudies-arrayexpress
2023-01-25 | GSE206132 | GEO
2015-06-13 | PXD001901 | Pride
2020-05-30 | GSE130957 | GEO