Transcriptomics

Dataset Information

0

Longitudinal transcriptome analysis of high risk cattle to determine host expressional changes associated with BRD development


ABSTRACT: Whole blood samples from 36 cattle, across two independent populations, were sequenced via a Illumina NovaSeq 6000 system. Samples were bioinformatically processed in a HISAT2/StringTie pipeline, and stratified based on treatment frequency for BRD (healthy, treated once, treated twice or more and/or died). Differential expression analysis was conducted in R, utilizing an additive, multifactor generalized linear model and blocking for paired samples and year. Genes were considered differentially expressed with an FDR cutoff of 0.10. The objective of this study was to identify differentially expressed genes and mechanisms within and across treatment cohorts overtime, and determine host expressional changes influenced by BRD within the first 28 days of facility arrival.

ORGANISM(S): Bos taurus

PROVIDER: GSE194167 | GEO | 2024/09/18

REPOSITORIES: GEO

Dataset's files

Source:
Action DRS
Other
Items per page:
1 - 1 of 1

Similar Datasets

2023-03-09 | GSE218061 | GEO
| PRJNA744165 | ENA
2020-01-14 | GSE136176 | GEO
2020-11-26 | GSE162156 | GEO
2012-07-30 | E-GEOD-39581 | biostudies-arrayexpress
2021-12-13 | GSE161396 | GEO
2021-03-01 | E-MTAB-9688 | biostudies-arrayexpress
2020-12-31 | GSE150706 | GEO
2022-03-02 | GSE179536 | GEO
2024-09-03 | GSE264627 | GEO