Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

ABSTRACT: This SuperSeries is composed of the SubSeries listed below.

ORGANISM(S): Rattus norvegicus

PROVIDER: GSE199987 | GEO | 2022/04/01

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Liver RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:As part of the PhenoGen Project (https://phenogen.org), liver RNA-Seq data has been collected from strains of the Hybrid Rat Diversity Panel (HRDP). RNA expression levels were estimated using high throughput RNA sequencing (RNA-Seq) on long (>200 nucleotides) RNAs, i.e., total RNA where ribosomal RNA was depleted. These data can be used to examine predisposition phenotypes in the HRDP. Processed data and interactive graphics are also available through the PhenoGen website. Additional data from additional strains will be added as they become available.

2022-04-01 | GSE199986 | GEO

Kidney RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:As part of the PhenoGen Project (https://phenogen.org), kidney RNA-Seq data has been collected from the HXB/BXH recombinant inbred rat panel, which is part of the Hybrid Rat Diversity Panel (HRDP). RNA expression levels were estimated using high throughput RNA sequencing (RNA-Seq) on long (>200 nucleotides) RNAs, i.e., total RNA where ribosomal RNA was depleted. These data can be used to examine predisposition phenotypes in the HRDP. Processed data and interactive graphics are also available through the PhenoGen website.

2022-04-01 | GSE199976 | GEO

Whole brain RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:As part of the PhenoGen Project (https://phenogen.org), whole brain RNA-Seq data has been collected from strains of the Hybrid Rat Diversity Panel (HRDP). RNA expression levels were estimated using high throughput RNA sequencing (RNA-Seq) on long (>200 nucleotides) RNAs, i.e., total RNA where ribosomal RNA was depleted. These data can be used to examine predisposition phenotypes in the HRDP. Processed data and interactive graphics are also available through the PhenoGen website. Additional data from additional strains will be added as they become available.

2022-04-01 | GSE199984 | GEO

Heart (Left Ventricle) RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:As part of the PhenoGen Project (https://phenogen.org), heart(left ventricle) RNA-Seq data has been/will be collected from strains of the Hybrid Rat Diversity Panel (HRDP). RNA expression levels were estimated using high throughput RNA sequencing (RNA-Seq) on long (>200 nucleotides) RNAs, i.e., total RNA where ribosomal RNA was depleted. These data can be used to examine predisposition phenotypes in the HRDP. Processed data and interactive graphics are also available through the PhenoGen website. Additional data from additional strains will be added as they become available.

2023-09-17 | GSE243029 | GEO

RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

| PRJNA822398 | ENA

Liver RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:Liver RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

| PRJNA822426 | ENA

Kidney RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:Kidney RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

| PRJNA822389 | ENA

Whole brain RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:Whole brain RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

| PRJNA822403 | ENA

Heart (Left Ventricle) RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

Project description:Heart (Left Ventricle) RNA expression levels in the Hybrid Rat Diversity Panel for the PhenoGen website (https://phenogen.org)

| PRJNA1016049 | ENA

The PhenoGen informatics website: tools for analyses of complex traits.

Project description:BackgroundWith the advent of "omics" (e.g. genomics, transcriptomics, proteomics and phenomics), studies can produce enormous amounts of data. Managing this diverse data and integrating with other biological data are major challenges for the bioinformatics community. Comprehensive new tools are needed to store, integrate and analyze the data efficiently.DescriptionThe PhenoGen Informatics website http://phenogen.uchsc.edu is a comprehensive toolbox for storing, analyzing and integrating microarray data and related genotype and phenotype data. The site is particularly suited for combining QTL and microarray data to search for "candidate" genes contributing to complex traits. In addition, the site allows, if desired by the investigators, sharing of the data. Investigators can conduct "in-silico" microarray experiments using their own and/or "shared" data.ConclusionThe PhenoGen website provides access to tools that can be used for high-throughput data storage, analyses and interpretation of the results. Some of the advantages of the architecture of the website are that, in the future, the present set of tools can be adapted for the analyses of any type of high-throughput "omics" data, and that access to new tools, available in the public domain or developed at PhenoGen, can be easily provided.

| S-EPMC2034588 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data