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Deep sequencing and fitness calculation for plasmids carrying the CREATE cassette from the enriched tolerant strains under different pressures by using Illumina protocol


ABSTRACT: We report using global regulator libraries based on the CRISPR-enabled trackable genome engineering (CREATE) method to engineer tolerance against multiple inhibitors in Escherichia coli. Deep mutagenesis libraries were rationally designed, constructed, and screened to target 34,340 mutations across 23 global regulators.These libraries were divided into G1, G2, G3, G4 and G5 sub-groups according to different gene functions (such as active sites, DNA binding sites, and predicted functional sites) . And we successively screened the libraries under different stress conditions (acetate, NaCl, furfural, high temperature and isobutanol), and enriched mutants able to tolerate multiple inhibitors. In order to determine the tolerance-conferring mutations screened under different stress conditions, deep sequencing and fitness analysis were used to detect the recombinant strains with good performance.

ORGANISM(S): Escherichia coli str. K-12 substr. MG1655

PROVIDER: GSE200448 | GEO | 2024/04/01

REPOSITORIES: GEO

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