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ScNMT-seq of pancreatic organoids - DNA methylation and chromatin accessibility

ABSTRACT: Single-cell nucleosome, methylome and transcriptome (scNMT) sequencing is a recently developed method that allows multiomics profiling of single cells. In this scNMT protocol, we describe profiling of cells from mouse brain and pancreatic organoids, using liquid handling platforms to increase throughput from 96-well to 384-well plate format. Our approach miniaturizes reaction volumes and incorporates the latest Smart-seq3 protocol to obtain a higher number of detected genes and genomic DNA (gDNA) CpG sites per cell. We outline normalization steps to optimally distribute per-cell sequencing depth.

ORGANISM(S): Mus musculus

PROVIDER: GSE210804 | GEO | 2022/08/12

REPOSITORIES: GEO

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