Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-Seq and genome-wide association analysis were utilized to find potential genes for rice seed shattering

ABSTRACT: The AZ and NAZ of the materials that were loss of shattering (DZ129) and easy to shattering (W517) were used to perform RNA-Seq, and high-quality differential expression profiles were obtained.

ORGANISM(S): Oryza sativa

PROVIDER: GSE211952 | GEO | 2022/12/14

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

RNA-Seq and genome-wide association analysis were utilized to find potential genes for rice seed shattering

Project description:RNA-Seq and genome-wide association analysis were utilized to find potential genes for rice seed shattering

| PRJNA873046 | ENA

The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size

Project description:The APETALA2-like transcription factor SUPERNUMERARY BRACT confers seed shattering by positively regulating qSH1 and SH5, while altering seed size by modulating longitudinal cell elongation in rice glumes.

2018-06-29 | GSE116422 | GEO

Abscission layer (AL) at the base of flower in rice using laser micro-dissection: NIL(qSH1) AL vs. Nipponbare AL, NIL(qSH1) AL vs. NIL(qSH1) upper region of AL, and NIL(qSH1) AL vs. NIL(qSH1) lower region of AL

Project description:Tissue-specific transcriptional profiling of the abscission layer (AL) at the base of young flower in rice using laser micro-dissection: NIL(qSH1) vs. Nipponbare. We used two rice varieties, NIL(qSH1) and Nipponbare. NIL(qSH1) is a nearly isogenic line containing the seed shattering gene qSH1. Seed shattering is easy in NIL(qSH1), but it is not in Nipponbare. So, we used some stages of young flower in NIL(qSH1) and some in Nipponbare. Four regions: 1. abscission layer region of NIL(qSH1), 2. upper abscission region of NIL(qSH1), 3. lower abscission layer region of NIL(qSH1), and 4. abscission layer region of Nipponbare. Sample experiments: NIL(qSH1) AL vs. Nipponbare AL, NIL(qSH1) AL vs. NIL(qSH1) upper region of AL, and NIL(qSH1) AL vs. NIL(qSH1) lower region of AL.

2012-03-31 | E-GEOD-33409 | biostudies-arrayexpress

The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size

Project description:The APETALA2-like transcription factor SUPERNUMERARY BRACT controls rice seed shattering and seed size

| PRJNA478446 | ENA

Genome-wide association study and transcriptome analysis discover novel genes for bacterial leaf streak resistance in rice

Project description:Using 15 resistant materials and 15 susceptible materials, PBS was inoculated as the control group, and Xoc was inoculated as the experimental group. After 12 h of inoculation, RNA-Seq was performed and high-quality differential expression profiles were obtained.

2023-04-15 | GSE229200 | GEO

Streamlined low-input transcriptomics through EASY-RNAseq

Project description:we describe a streamlined RNAseq protocol (EASY RNAseq) for sensitive transcriptome assessment starting from low amount of input materials. EASY RNAseq is technically robust enough for sequencing small pools of homogenous and heterogeneous cells, recovering higher numbers of genes and with a more even expression distribution pattern than other commonly used methods.

2020-08-01 | GSE135290 | GEO

Rice Seed Macrogenome

Project description:Rice Seed Macrogenome Raw sequence reads

| PRJNA904974 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Seed Development of Easy Dehulling Tartary Buckwheat Transcriptomes

Project description:We generated 78.41 Gb of high-quality sequencing data (~8.71 Gb per sample) and catalogued the expression profiles of 9,765 annotated Tartary buckwheat genes in each sample. The analysis showed differences of transcriptomes during the development of easy dehulling buckwheat seed. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in development of easy dehulling buckwheat seed. Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to easy dehulling character.

2022-03-31 | GSE122540 | GEO

Candida auris proteomic profiling

Project description:In this study, we designed a novel antifungal agent, PQA-Az-13 that demonstrated antifungal activity against C. auris biofilms. Cellular proteomics indicated that PQA-Az-13 partially or completely inhibited numerous enzymatic proteins in C. auris biofilms, particularly those involved in both amino acid biosynthesis and metabolism processes, as well as in general energy-producing processes. Due to its hydrophobic nature and limited aqueous solubility, PQA-Az-13 was encapsulated in cationic liposomes and characterized by biophysical and spectral techniques. PQA-Az-13 liposomes demonstrated enhanced antifungal activity levels against both C. auris in in vitro biofilms and ex vivo skin colonization models.

2023-12-07 | PXD046911 | Pride

Engineering Patient-Specific Tissue Implants

Project description:We developed an approach to engineer completely personalized tissue implants that are based merely on the patient’s own materials and cells. Here, an omentum is extracted from the patient in a safe, easy and quick procedure. The cells and the ECM materials of the tissue are separated and while the cells are reprogrammed to become pluripotent, the ECM is processed to become a personalized thermoresponsive hydrogel. The undifferentiated cells are then encapsulated within the hydrogel and efficiently differentiated to cardiomyocytes, neurons, and endothelial cells.

2019-04-06 | GSE97341 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data