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DNA methylation-environment interactions in the human genome

ABSTRACT: This project uses the massively parallel reporter assay, mSTARR-seq (Lea et al., 2018) to simultaneously test for both enhancer-like activity and DNA methylation-dependent enhancer activity across nearly the entire human genome. We assessed enhancer activity at almost all CpG sites profiled either on the commonly used Illumina Infinium MethylationEPIC array or via reduced representation bisulfite sequencing. Experiments were performed in K562 and HepG2 cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE222643 | GEO | 2023/09/07

REPOSITORIES: GEO

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