Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Analysis of cell type heterogeneity in breast tissue II

ABSTRACT: We used 10X Chromium single cell RNA-sequencing to study single cells from dissociated breast tissue

ORGANISM(S): Homo sapiens

PROVIDER: GSE226391 | GEO | 2023/03/02

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Analysis of cell type heterogeneity in breast tissue.

Project description:We used PIP-seq single cell RNA-sequencing to study single cells from dissociated breast tissue

2023-01-12 | GSE215060 | GEO

Analysis of cell type heterogeneity in breast tissue

Project description:We used PIP-seq single cell RNA-sequencing to study single cells from dissociated breast tissue

2023-01-12 | GSE202913 | GEO

Single cell RNA seq of 8 week old wild-type mouse choroid-RPE tissue

Project description:Whole choroids/RPE complexes were dissected from wildtype ICR mice at 8 weeks of age, dissociated and subjected to single cell RNA sequencing using the 10x Chromium platform

2024-09-04 | GSE271996 | GEO

Single-cell transcriptomics analysis of pancreatic primary tumor and metastatic biopsy tissues

Project description:The single-cell RNA profiles of dissociated 10 pancreatic primary tumors and 6 metastatic biopsies were obtained using the 10x Genomics Chromium platform

2020-10-01 | GSE154778 | GEO

scRNA-seq profiling of vascular cells isolated from disease-free human breast based on the expression of CD36 and/or CD31

Project description:To identify markers preferentially expressed by capillary ECs (highly expressing CD36) in the disease-free human breast and gain insights into their biology, we used single cell RNA sequencing (scRNA-seq). For this analysis, dissociated cells from disease-free tissues were barcoded using the MULTI-seq protocol and pooled prior to FACS-based isolation of CD36+ and/or CD31+ cells. The droplet-based 10x Genomics Chromium platform was used to encapsulate single cells and construct cDNA libraries. Populations of fibroblasts, perivascular, lymphatic and vascular endothelial ECs where identified in this analysis.

2021-12-11 | GSE190592 | GEO

scATAC-seq of mouse liver tissue derived from young and old mice II

Project description:We investigate if the differences in phenotype and transcriptome over age might be explained by an underlying change on the epigenetic level. We performed single-cell ATAC sequencing using the 10x Chromium platform. We profiled 2259 nuclei prepared from 3 young liver tissues and 2490 nuclei from 3 old liver tissues.

2023-11-09 | E-MTAB-12560 | biostudies-arrayexpress

Single cell RNAseq of human primary lung adenocarcinomas [scRNA-seq]

Project description:To study heterogenous cellular function and behaviors, we isolated individual cells from freshly resected and dissociated two human primary lung adenocarcinomas, removed DAPI-positive dead cells, and performed single cell analysis using the 10x Genomics Chromium platform.

2024-01-17 | GSE164983 | GEO

Single cell RNA-seq of human breast skin cells

Project description:Cells were generated for a single cell atlas of adult human skin to dissect the cellular and molecular organisation underpinning human skin immune barrier function. Surplus skin from breast reconstruction surgery was collected (n=3), then the top 200 μm layer was taken. Epidermis was separated from the dermis, and both layers were separately digested. Single cells were FACS sorted into eight categories, then loaded onto a 10x Genomics Chromium Controller, and sequenced on an Illumina HiSeq 4000.

2021-02-10 | E-MTAB-8142 | biostudies-arrayexpress

Enteric nervous system: timecourse analysis of longitudinal muscle and myenteric plexus (LMMP) in mice

Project description:Samples of dissociated mouse small intestinal longitudinal muscle-myenteric plexus were prepared from post natal day 10 (P10), P20, and P60, each with two biological replicates. Samples were run through the 10x Chromium 3' Single Cell Gene Expression platform v3.1

2023-02-06 | GSE213604 | GEO

Single-cell RNA-seq of mouse kidneys undergoing ferroptosis

Project description:We performed single-cell transcriptomics analyses (10x Chromium 3' v3.1) using dissociated total kidney cells to identify the difference in gene expression patterns and signaling pathways between male and female mouse kidneys after selective induction of ferroptotic stress in renal tubular epithelial cells.

2022-10-27 | GSE197528 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data