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A flexible Transcriptomic Analysis Pipeline (TAP) for quality control and functional assessment of transcriptomes

ABSTRACT: We developed a Transcriptomic Analysis Pipeline (TAP) as a flexible workflow for comprehensive transcriptome analysis from any species with a reference genome. We tested TAP in a case study to compare polyA+ and rRNA-depletion RNA-seq library protocols using Drosophila melanogaster following different thermal stress temperatures. TAP provides a flexible and complete pipeline to enable researchers to extract more biologically relevant interpretations by integrated and interactive transcriptome analysis.

ORGANISM(S): Drosophila melanogaster

PROVIDER: GSE229448 | GEO | 2023/11/09

REPOSITORIES: GEO

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