Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell Multiplex]

ABSTRACT: Morphological changes suggested cell state switching and scRNASeq profiles were therefore generated to use in downstream comparative transcriptomics analysis and for identification of cell state regulators.

ORGANISM(S): Mus musculus

PROVIDER: GSE233091 | GEO | 2024/04/10

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell]

Project description:Morphological changes suggested cell state switching and scRNASeq profiles were therefore generated to use in downstream comparative transcriptomics analysis and for identification of cell state regulators.

2024-04-10 | GSE233092 | GEO

Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell Multiplex]

Project description:Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell Multiplex]

| PRJNA974901 | ENA

Role of Mcam in breast cancer cell state using a model cell line (Py230)

Project description:This SuperSeries is composed of the SubSeries listed below.

2024-04-10 | GSE233093 | GEO

Role of Mcam in breast cancer cell state using a model cell line (Py230)

Project description:Role of Mcam in breast cancer cell state using a model cell line (Py230)

| PRJNA974896 | ENA

Role of Mcam in breast cancer cell state using a model cell line (Py230) [bulk RNA-Seq]

Project description:To investigate effect of Mcam KD on tumor gene expression profile in orthotopic Py230 derived grafted tumors

2024-04-10 | GSE233090 | GEO

Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell]

Project description:Role of Mcam in breast cancer cell state using a model cell line (Py230) [single cell]

| PRJNA974900 | ENA

Role of Mcam in breast cancer cell state using a model cell line (Py230) [bulk RNA-Seq]

Project description:Role of Mcam in breast cancer cell state using a model cell line (Py230) [bulk RNA-Seq]

| PRJNA974899 | ENA

MCAM MPM cell line

Project description:To examine methylation profile of the CpG promoters in MPM cell lines.

2009-12-01 | E-TABM-808 | biostudies-arrayexpress

Pseudotime ordering of cell cycle state

Project description:We will be using G&T method to sequence single cell genome and transcriptome derived from FS13B iPSCs cell line. The cell cycle state of each of the single cells is known. Hence, we will be analysing the genome and transcriptome of single cells from each of the cell cycle state to generate a copy number profile and transcriptome profile per given cell cycle stage: G1, S, G2, S.

| EGAS00001003293 | EGA

RNA-seq of human melanoma cell line A375m2 treated with SB202190 OR BIRB796 against DMSO-treated controls

Project description:Melanoma cells can switch between a more differentiated, proliferative phenotype and a dedifferentiated, invasive phenotype in response to signals from the environment. We found that p38 MAPK inhibitors SB202190 and BIRB796 induce phenotype switching from the dedifferentiated, invasive phenotype to the more differentiated phenotype in A375m2 melanoma cells cultured in three-dimensional collagen. The phenotype switch is accompanied by a morphological transition from rounded, blebby, amoeboid shape to elongated, spindle-like morphology. We performed transcriptome profiling with RNA-seq to uncover the underlying gene expression changes. Cells kept in 3D collagen were treated either with 10 µM inhibitor or with 0.1% DMSO (the vehicle) only for 48 hours and total RNA was isolated using a TRIzol-like procedure. Sequencing libraries were prepared from poly(A) RNA and sequenced with Illumina HiSeq 2500 instrument.

2020-11-28 | E-MTAB-9273 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data