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Effect of Morc1 knock out on gonocyte chromatin and transcriptome [RNA-Seq 2]

ABSTRACT: To investigate the function of Morc1 to chromatin state during gonocyte stage when around 10,000 copies of transposons are deregulated.

ORGANISM(S): Mus musculus

PROVIDER: GSE235428 | GEO | 2024/02/05

REPOSITORIES: GEO

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MORC1 represses transposable elements in the mouse male germ line

Project description:The Microrchidia (Morc) family of GHKL ATPases are present in a wide variety of prokaryotic and eukaryotic organisms but are of largely unknown function. Genetic screens in Arabidopsis thaliana have identified Morc genes as important repressors of transposons and other DNA methylated and silent genes. MORC1 deficient mice were previously found to display male-specific germ cell loss and infertility. Here we show that MORC1 is responsible for transposon repression in the male germline in a pattern that is similar to that observed for germ cells deficient for the DNA methyltransferase homolog DNMT3L. Morc1 mutants show highly localized defects in the establishment of DNA methylation at specific classes of transposons, and this is associated with failed transposon silencing at these sites. Our results identify MORC1 as an important new regulator of the epigenetic landscape of male germ cells during the period of global de novo methylation. This data includes: 47 RNA-seq, 4 smRNA-seq, 6 BS-seq, and 2 ChIP-seq datasets

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