Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

H3K27ac ChIP-seq of SK-Hep-1, Huh7, SNU387, and SNU182 cells

ABSTRACT: To investigate enhancers and super-enhancers in liver cancer cells, we performed H3K27ac ChIP-seq in SK-Hep-1, Huh7, SNU387, and SNU182 cells.

ORGANISM(S): Homo sapiens

PROVIDER: GSE243541 | GEO | 2023/09/20

REPOSITORIES: GEO

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

H3K27ac ChIP-seq of SK-Hep-1, Huh7, SNU387, and SNU182 cells

Project description:H3K27ac ChIP-seq of SK-Hep-1, Huh7, SNU387, and SNU182 cells

| PRJNA1018888 | ENA

Expression analysis of sk-hep-1(sk) cell and sk-hep-1-sh EZH2(sks) cell

Project description:Investigation of EZH2 knocking down on whole genome gene expression level changes in sk-hep-1 compared to sk-hep-1-sh EZH2.

2015-08-13 | GSE68863 | GEO

Genome-wide maps of H3K27me3 modification sites in sk-hep-1,sk-hep-1-shEZH2 and LO2 cells.

Project description:We report the application of chromatin immunoprecipitation coupled with high-throughput sequencing (ChIP-seq) for high-throughput profiling of H3K27me3 modifications in sk-hep-1(sk), sk-hep-1-shEZH2 (sks) and LO2 cells. Following standard ChIP procedure, 10 ng of each DNA sample was used for Illumina sequencing. Statistically significant ChIP-enriched regions (peaks) were identified by sk vs sks (p-value threshold of 10-2) or sk vs LO2 (p-value threshold of 10-3). Enriched peaks were annotated by the nearest gene using the newest UCSC RefSeq database. We identify genes modified by EZH2-mediated H3K27me3. This study provides insights into these down stream genes modified by EZH2 regulated H3K27me3 in HCC cell lines.

2015-08-13 | GSE68758 | GEO

N6-methyladenosine (m6A) RIP-seq in SK-Hep-1 cells

Project description:To explore the m6a modification in SK-Hep-1 cells, we performed RNA immunoprecipitation with an antibody against m6a (SYSY), and sequencing was performed using Illumina NovaSeq 6000

2023-09-20 | GSE243538 | GEO

ATAC-seq for SK-HEP-1 cell line with or without sirolimus treatment

Project description:The openness of chromatin affects the expression and regulation of genes. In order to figure out the changes of transcriptional factors after sirolimus treatment in hepatocellular carcinoma, ATAC-seq was performed for human hepatocellular carcinoma cell line SK-HEP-1. Here, we found that a series of transcriptional factors, including E2F1, SP1, M2F1, etc. enhanced binding to DNA after sirolimus treatment.

2023-12-06 | GSE239926 | GEO

N6-methyladenosine (m6A) RIP-seq in SK-Hep-1 cells

Project description:N6-methyladenosine (m6A) RIP-seq in SK-Hep-1 cells

| PRJNA1018884 | ENA

Effect of knockdown LINC01089 on gene expression in SK-Hep-1 cells

Project description:Effect of knockdown LINC01089 on gene expression in SK-Hep-1 cells

| PRJNA1018883 | ENA

ATAC-seq for SK-HEP-1 cell line with or without sirolimus treatment

Project description:ATAC-seq for SK-HEP-1 cell line with or without sirolimus treatment

| PRJNA1001395 | ENA

Global hepatic transcript data from LRH-1 hep+/+ and LRH-1 hep-/- livers

2014-07-11 | GSE59305 | GEO

Global hepatic transcript data from LRH-1 hep+/+ and LRH-1 hep-/- livers

Project description:Transcript data from LRH-1 hep+/+ and LRH-1 hep-/- livers from mice fed ad libitum and sacrificed at 7 am We used microarrays to detail the global programme of gene expression underlying hepatic function in ad libitum fed mice. 17-19-week-old mice were fed ad libitum, sacrificed at 7 am, and livers snap-frozen in liquid nitorgen for RNA extraction and hybridization on Affymetrix microarrays.

2014-07-11 | E-GEOD-59305 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data