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Effects of the deletion of tomato m6A demethylase SlALKBH2 on transcriptome-wide gene expression profiles during the initiation of fruit ripeing.

ABSTRACT: RNA-seq analysis was conducted to elucidate the transcriptome-wide gene expression differences between the wild-type and the slalkbh2 mutants (slalkbh2-25 and slalkbh2-28). In comparison to the wild-type, we identified 602 downregulated genes and 833 upregulated genes in the slalkbh2-25 mutant, as well as 556 downregulated genes and 470 upregulated genes in the slalkbh2-28 mutant (with a cutoff criterion of FPKM fold change ≥ 1.5 and P value < 0.05). Consequently, 281 downregulated genes and 126 upregulated genes were consistently identified in both slalkbh2 mutants, which were considered differentially expressed genes.

ORGANISM(S): Solanum lycopersicum

PROVIDER: GSE271468 | GEO | 2024/11/16

REPOSITORIES: GEO

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