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Tiling array hybridizations of genomic DNA from Bacillus subtilis 168.

ABSTRACT: Genomic DNA prepared from B. subtilis 168 cells grown to stationary phase was hybridized to tiling arrays. The data are used in transcriptome studies to compute expression intensities from raw intensity data using a model of shift and drift and correcting for probe affinity variations as described in (Nicolas et al., 2009, Bioinformatics 25, 2341-2347).

ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168

PROVIDER: GSE27419 | GEO | 2012/03/07

SECONDARY ACCESSION(S): PRJNA137247

REPOSITORIES: GEO

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Tiling array hybridizations of genomic DNA from Bacillus subtilis 168.

Project description:Genomic DNA prepared from B. subtilis 168 cells grown to stationary phase was hybridized to tiling arrays. The data are used in transcriptome studies to compute expression intensities from raw intensity data using a model of shift and drift and correcting for probe affinity variations as described in (Nicolas et al., 2009, Bioinformatics 25, 2341-2347). B. subtilis 168 was grown in LB medium to stationary phase. Genomic DNA was prepared from four independent cultures. After sonication, DNA was labeled with Cy3 and hybridized to tiling arrays.

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